Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O03
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    23   4.0  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    23   5.3  
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    23   7.0  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    23   7.0  
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.0  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    23   7.0  

>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 132  HRFQDL*IPVRWASRAPPRLKVGQPRKP 49
            H F+ L +P+R   R P   +V Q   P
Sbjct: 1331 HMFESLLVPMRLKYRCPKASRVNQSTLP 1358


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 95  AHRTGIYRSWNRWQR 139
           A+  G+  SWN W R
Sbjct: 701 ANSNGLTESWNEWMR 715


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 34  DRTI*GFTRLSYF*SRRCARCPPNRNLQILESVAAFW 144
           +R I G+  +  F  ++ A CP   N+ + +  +A+W
Sbjct: 366 NRIICGYCAMESF-YKKDATCPHCGNMTVKKQTSAYW 401


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 102 RWASRAPPRLKVGQPRKPSYRSIQQPYESL 13
           RW       +KV   R+  YR++Q+   +L
Sbjct: 313 RWTLLVDKMIKVDPQRRGRYRTLQEKINNL 342


>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -2

Query: 164 DTVLNNAQNAATDSKICRFLFGGHRAH 84
           +T ++N+ + +    +C+F   GH+ H
Sbjct: 243 NTDVDNSSSLSLTLPLCKFTKNGHQVH 269


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 117 DLGIGGSVLGIVKDCV 164
           DLG+GG++  ++KD +
Sbjct: 597 DLGVGGALTVLLKDAI 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,908
Number of Sequences: 5004
Number of extensions: 13154
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)