Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O03
(189 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0897 + 32603060-32603387,32604348-32604589,32604681-326048... 27 1.6
07_03_1347 + 25932185-25932748,25933151-25933755,25935797-259362... 27 2.1
03_06_0221 + 32458867-32459149,32460271-32460386,32460461-324608... 27 2.8
11_03_0136 + 10591247-10591352,10591463-10591712,10595401-105955... 26 3.7
10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568 26 3.7
04_01_0615 - 8060085-8060972 26 3.7
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136... 26 4.9
05_03_0034 - 7589272-7589670,7589729-7590007 25 6.4
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 25 6.4
08_02_0013 - 11251368-11252867 25 8.5
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 25 8.5
05_07_0351 + 29468247-29469851 25 8.5
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 25 8.5
>02_05_0897 +
32603060-32603387,32604348-32604589,32604681-32604824,
32604889-32605050,32605129-32605212,32605528-32605601,
32605850-32606039,32606120-32606275,32606368-32606465,
32606976-32607102,32607193-32607292,32607402-32607572,
32607790-32607838,32607912-32608003,32608705-32608774,
32608999-32609023,32609059-32609293,32609425-32609525,
32609614-32609865
Length = 899
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 99 WASRAPPRLKVGQPRKPSYRSIQQPYESLVP 7
WA +PPRL +G P + QP+E+ P
Sbjct: 689 WAPMSPPRLALGWQSMPG-TPVPQPHEAPTP 718
>07_03_1347 +
25932185-25932748,25933151-25933755,25935797-25936214,
25936433-25936555,25936775-25936989,25937157-25937412,
25937844-25938149,25938764-25938820,25939635-25939685
Length = 864
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 175 TSSSTQSLTMPKTLPPIPRSVDSCSVGI 92
+S+ST S T+ + PP PRS+ SC I
Sbjct: 6 SSTSTPSSTIERLRPPYPRSI-SCHASI 32
>03_06_0221 +
32458867-32459149,32460271-32460386,32460461-32460807,
32461231-32461411,32461507-32461629,32461828-32462115,
32462536-32462688,32463068-32463169,32463260-32463313,
32463518-32463624,32463867-32463927,32464019-32464150,
32464245-32464382,32464459-32464539,32464635-32464715,
32465133-32465213,32465300-32465413
Length = 813
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 111 IPVRWASRAPPRLKVGQPRKPS 46
+P A+R P R+K+GQP+ P+
Sbjct: 80 LPQPSAARKPLRIKIGQPKLPT 101
>11_03_0136 +
10591247-10591352,10591463-10591712,10595401-10595578,
10596741-10597136
Length = 309
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 105 VRWASRAPPRLKVGQPRKPSYRSIQQPYESLVPN 4
VRW + PR+KV + + R+ Q PY +P+
Sbjct: 118 VRWEANQIPRVKVAKIDLNTARNEQTPYMPEIPD 151
>10_08_0569 + 18844910-18845249,18845353-18845471,18846557-18846568
Length = 156
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = -3
Query: 175 TSSSTQSLTMPKTLPPIPRSVDSCSVGIXXXXXXXXXXXXXTLISF--DPATLRKPRAE 5
+SSS+ P+ PP P + C +G+ LI DPAT + E
Sbjct: 50 SSSSSSGTAAPEDPPPPPTRMSGCVIGVRRGGTVDVSDILDILILHGPDPATFDRALLE 108
>04_01_0615 - 8060085-8060972
Length = 295
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 96 ASRAPPRLKVGQPRKPSYRS 37
+S APP +G PRKP +R+
Sbjct: 191 SSAAPPAWDLGGPRKPHFRA 210
>05_01_0190 +
1366791-1366817,1367536-1367616,1367858-1367900,
1368104-1368182,1368291-1368450,1368565-1368692,
1369134-1369202,1369796-1369883,1370516-1370591,
1370767-1370840,1372635-1372742,1373783-1373944,
1374179-1374283,1374447-1374527,1374603-1375803,
1376654-1376750,1378086-1378160,1378461-1378623
Length = 938
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 99 TEQESTDLGIGGSVLGIVKDCVDD 170
TE+ D G+G S LG++ + VDD
Sbjct: 643 TERYQEDAGVGTSGLGLLSNNVDD 666
>05_03_0034 - 7589272-7589670,7589729-7590007
Length = 225
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 47 EGLRGCPTFSRGGARDAHRTGIYRSW 124
EG RGC S G ++ TG+ +SW
Sbjct: 39 EGPRGCRGESPRGYSNSKPTGVVKSW 64
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 187 RHIYTSSSTQSLTMPKTLPPIPRSVDSCSVG 95
+H SSS+ MP LPP P S ++ ++G
Sbjct: 58 KHHRRSSSSSPPPMPPPLPPPPPSANAPTLG 88
>08_02_0013 - 11251368-11252867
Length = 499
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 91 RCPPNRNLQILESVAAFWALLRTVSTMTCICAS 189
R PP R L L + A+ +L +ST +CA+
Sbjct: 130 RLPPRRRLLNLATAASIGVVLPALSTHCHLCAA 162
>06_01_0581 -
4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -1
Query: 99 WASRAPPRLKVGQPRKPSYRSIQQPYES 16
WA+R R +G P + +YRS++ + S
Sbjct: 535 WANRPIARGSIGAPSRFAYRSLENNFFS 562
>05_07_0351 + 29468247-29469851
Length = 534
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 59 GCPTFSRGGARDAHRTGIYRSWNRWQRFG 145
GC TF GGA ++H GI N FG
Sbjct: 260 GCSTFEHGGAVNSH-DGILSLGNSPSSFG 287
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 99 TEQESTDLGIGGSVLGIVKDCV 164
+++E TDL + GSVL +++ C+
Sbjct: 239 SQEEDTDLPLVGSVLALLRYCL 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,039,004
Number of Sequences: 37544
Number of extensions: 108569
Number of successful extensions: 339
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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