Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O03
         (189 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1 s...    29   3.5  
D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium...    29   3.5  
AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel, voltag...    29   3.5  
AF173155-1|AAF06999.1| 1241|Homo sapiens interphotoreceptor matr...    27   8.1  
AF028120-1|AAD01846.1|   37|Homo sapiens immunoglobulin heavy ch...    27   8.1  

>M83566-1|AAA35629.1| 2181|Homo sapiens calcium channel alpha-1
           subunit protein.
          Length = 2181

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 29  CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 142
           CW  R    +  P+  R   +   ++ + R W RW RF
Sbjct: 494 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 531


>D43747-1|BAA07804.1| 2170|Homo sapiens voltage-dependent calcium
           channel alpha1 subunit, CACN4 protein.
          Length = 2170

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 29  CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 142
           CW  R    +  P+  R   +   ++ + R W RW RF
Sbjct: 485 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 522


>AB209171-1|BAD92408.1| 1854|Homo sapiens calcium channel,
           voltage-dependent, L type, alpha 1D subunit variant
           protein.
          Length = 1854

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 29  CWIERYEGLRGCPTFSRGGARDAHRTGIYRSWNRWQRF 142
           CW  R    +  P+  R   +   ++ + R W RW RF
Sbjct: 167 CWWRRRGAAKAGPSGCRRWGQAISKSKLSRRWRRWNRF 204


>AF173155-1|AAF06999.1| 1241|Homo sapiens interphotoreceptor matrix
           proteoglycan 200 protein.
          Length = 1241

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 175 TSSSTQSLTMPKTLPPIPRSVDSCSV 98
           T++ + SLT+PK +  +P  VD CSV
Sbjct: 693 TAAESASLTLPKHISEVP-GVDDCSV 717


>AF028120-1|AAD01846.1|   37|Homo sapiens immunoglobulin heavy chain
           protein.
          Length = 37

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 85  CARCPPNRNLQILESVAAFW--ALLRTVST 168
           CAR PPNR  ++L S  ++W    L TVS+
Sbjct: 8   CARGPPNRFGELLSSPRSYWGQGTLVTVSS 37


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,442,369
Number of Sequences: 237096
Number of extensions: 527896
Number of successful extensions: 1309
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 76,859,062
effective HSP length: 42
effective length of database: 66,901,030
effective search space used: 1338020600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)