Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O03
         (189 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    26   4.3  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    26   4.3  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical pr...    25   7.5  
Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical pr...    25   7.5  
L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor pr...    25   7.5  
AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dau...    25   7.5  
AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dau...    25   7.5  
AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dau...    25   7.5  
AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical ...    25   9.9  

>AL023828-7|CAA19452.1|  881|Caenorhabditis elegans Hypothetical
           protein Y17G7B.5a protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 158 VLNNAQNAATDSKICRFLFGGHRAHRRD*K 69
           V+ ++ ++  D ++ +F+ G HR H  D K
Sbjct: 637 VIRDSVDSVEDERLAKFVVGNHRTHHPDAK 666


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 92  DAHRTGIYRSWNRWQRF 142
           DAHRTG+ R WN  + F
Sbjct: 520 DAHRTGVSRWWNSIKAF 536


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 97  PPNRNLQILESVAAFWALLRTVSTMTCICA 186
           PP+  L    S  AF AL   +ST+ C+C+
Sbjct: 870 PPSSRLANCLSSVAFPALQAALSTILCVCS 899


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 97  PPNRNLQILESVAAFWALLRTVSTMTCICA 186
           PP+  L    S  AF AL   +ST+ C+C+
Sbjct: 870 PPSSRLANCLSSVAFPALQAALSTILCVCS 899


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 182  HIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD 75
            ++ V++D V  N+     +SK   FL   HR HR D
Sbjct: 3306 NLRVVIDEVFANSVFDKLNSKFRPFLSYRHRLHRPD 3341


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 182  HIHVIVDTVLNNAQNAATDSKICRFLFGGHRAHRRD 75
            ++ V++D V  N+     +SK   FL   HR HR D
Sbjct: 3306 NLRVVIDEVFANSVFDKLNSKFRPFLSYRHRLHRPD 3341


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 122  KICRFLFGGHRAHRRD 75
            +IC  +FGGH+ H +D
Sbjct: 1696 EICSIMFGGHQHHDKD 1711


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 122  KICRFLFGGHRAHRRD 75
            +IC  +FGGH+ H +D
Sbjct: 1696 EICSIMFGGHQHHDKD 1711


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 103 NRNLQILESVAAFWALLRTVSTMTCICA 186
           N    +L  VA     + TVST+TCI A
Sbjct: 7   NHEASMLRKVAFLGICISTVSTLTCIIA 34


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 24/58 (41%), Positives = 27/58 (46%)
 Frame = -1

Query: 174 RHRRHSP*QCPKRCHRFQDL*IPVRWASRAPPRLKVGQPRKPSYRSIQQPYESLVPNK 1
           R  R SP   P R  R      PVR  SR+PPR +V + R P  R  QQ   S  P K
Sbjct: 109 RRTRRSP--SPPRRRRISRS--PVR-RSRSPPRRQVSRSRSPPPRR-QQRSRSPPPAK 160


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 178 YTSSSTQSLTMPKTLPPIP 122
           +T+SST+S T    +PPIP
Sbjct: 912 FTTSSTESFTRGGFIPPIP 930


>Z68220-9|CAL64002.1|  312|Caenorhabditis elegans Hypothetical
           protein T20D3.5b protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  SRRCARCPPNRNLQILESVAAF 141
           S +C R PPN +  I  + AAF
Sbjct: 110 SLKCPRSPPNSSFSICHAQAAF 131


>Z68220-8|CAA92487.1|  221|Caenorhabditis elegans Hypothetical
           protein T20D3.5a protein.
          Length = 221

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 76  SRRCARCPPNRNLQILESVAAF 141
           S +C R PPN +  I  + AAF
Sbjct: 19  SLKCPRSPPNSSFSICHAQAAF 40


>L23110-1|AAA03544.1|  744|Caenorhabditis elegans BMP receptor
           protein.
          Length = 744

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  ARCPPNRNLQILESVAAFWALLRTVSTMTCI 180
           A  P N +L+ L+    +W ++  +S + CI
Sbjct: 214 ASTPSNMDLESLDKFPFYWIIIIALSVILCI 244


>AF047651-12|AAN63460.1|  592|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform c protein.
          Length = 592

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  ARCPPNRNLQILESVAAFWALLRTVSTMTCI 180
           A  P N +L+ L+    +W ++  +S + CI
Sbjct: 62  ASTPSNMDLESLDKFPFYWIIIIALSVILCI 92


>AF047651-11|AAO61443.1|  446|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform d protein.
          Length = 446

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  ARCPPNRNLQILESVAAFWALLRTVSTMTCI 180
           A  P N +L+ L+    +W ++  +S + CI
Sbjct: 214 ASTPSNMDLESLDKFPFYWIIIIALSVILCI 244


>AF047651-10|AAC02726.1|  744|Caenorhabditis elegans Abnormal dauer
           formation protein4, isoform a protein.
          Length = 744

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  ARCPPNRNLQILESVAAFWALLRTVSTMTCI 180
           A  P N +L+ L+    +W ++  +S + CI
Sbjct: 214 ASTPSNMDLESLDKFPFYWIIIIALSVILCI 244


>AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical
           protein H43I07.1 protein.
          Length = 266

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 108 PVRWASRAPPRLKVGQPRKPSYRSIQQPYESL 13
           P + + +APP  K  + +KP+  S++Q ++ +
Sbjct: 154 PPKPSQQAPPPEKPSEEKKPATESLKQRFQRI 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,815,475
Number of Sequences: 27780
Number of extensions: 81127
Number of successful extensions: 236
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)