Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_O02
         (111 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    50   3e-08
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    50   3e-08
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    35   0.001
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    22   9.3  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    22   9.3  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 50.4 bits (115), Expect = 3e-08
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +3

Query: 48  DLMYAKRAFVHWYVGEGMEEG 110
           DLMY+KRAFVHWYVGEGMEEG
Sbjct: 400 DLMYSKRAFVHWYVGEGMEEG 420


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 50.4 bits (115), Expect = 3e-08
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +3

Query: 48  DLMYAKRAFVHWYVGEGMEEG 110
           DLMY+KRAFVHWYVGEGMEEG
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEG 416


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 35.1 bits (77), Expect = 0.001
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 54  MYAKRAFVHWYVGEGMEE 107
           M+ ++AF+HWY GEGM+E
Sbjct: 388 MFRRKAFLHWYTGEGMDE 405


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 45  VDLMYAKRAFVHWY 86
           V+L+Y  R+ V WY
Sbjct: 204 VELIYVMRSLVQWY 217


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 27  LVSTTSVDLMYAKRAFVHWYV 89
           LV       M A+R +VHW V
Sbjct: 397 LVERIDAFYMNARRTYVHWVV 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,626
Number of Sequences: 5004
Number of extensions: 4276
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 18
effective length of database: 2,272,406
effective search space used: 40903308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)