Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O02
(111 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 52 9e-08
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 52 9e-08
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 50 2e-07
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 50 2e-07
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 35 0.008
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 35 0.008
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 35 0.008
03_01_0034 + 318432-318825,318902-319851 35 0.008
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 35 0.008
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 35 0.008
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 35 0.008
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 33 0.043
01_06_1014 - 33810112-33811995 29 0.70
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 27 2.1
04_04_0340 + 24517562-24520318 26 3.8
06_03_1084 + 27483276-27483492,27483991-27484121,27484685-274847... 25 6.6
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026... 25 8.7
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843... 25 8.7
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 25 8.7
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605 25 8.7
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 51.6 bits (118), Expect = 9e-08
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3
Query: 48 DLMYAKRAFVHWYVGEGMEEG 110
DLMYAKRAFVHWYVGEGMEEG
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEG 416
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 51.6 bits (118), Expect = 9e-08
Identities = 21/21 (100%), Positives = 21/21 (100%)
Frame = +3
Query: 48 DLMYAKRAFVHWYVGEGMEEG 110
DLMYAKRAFVHWYVGEGMEEG
Sbjct: 477 DLMYAKRAFVHWYVGEGMEEG 497
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 50.4 bits (115), Expect = 2e-07
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 48 DLMYAKRAFVHWYVGEGMEEG 110
DLMY+KRAFVHWYVGEGMEEG
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEG 416
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 50.4 bits (115), Expect = 2e-07
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = +3
Query: 48 DLMYAKRAFVHWYVGEGMEEG 110
DLMY+KRAFVHWYVGEGMEEG
Sbjct: 396 DLMYSKRAFVHWYVGEGMEEG 416
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 388 MFRRKAFLHWYTGEGMDE 405
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 568 MFRRKAFLHWYTGEGMDE 585
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 388 MFRRKAFLHWYTGEGMDE 405
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 388 MFRRKAFLHWYTGEGMDE 405
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 388 MFRRKAFLHWYTGEGMDE 405
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 409 MFRRKAFLHWYTGEGMDE 426
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 35.1 bits (77), Expect = 0.008
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY GEGM+E
Sbjct: 388 MFRRKAFLHWYTGEGMDE 405
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 32.7 bits (71), Expect = 0.043
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 54 MYAKRAFVHWYVGEGMEE 107
M+ ++AF+HWY EGM+E
Sbjct: 404 MFRRKAFLHWYTSEGMDE 421
>01_06_1014 - 33810112-33811995
Length = 627
Score = 28.7 bits (61), Expect = 0.70
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +3
Query: 60 AKRAFVHWYVGEGM 101
+KRA +HW++GEG+
Sbjct: 187 SKRAMIHWWIGEGL 200
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 106 SSIPSPTYQCTKARLAYIKS 47
S+ PSPT+ C K R Y KS
Sbjct: 147 SAAPSPTWGCPKCRFPYPKS 166
>04_04_0340 + 24517562-24520318
Length = 918
Score = 26.2 bits (55), Expect = 3.8
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3
Query: 45 VDLMYAKRAFVHWYVGE 95
VD + KR +HW++GE
Sbjct: 485 VDAIIKKRLLIHWWIGE 501
>06_03_1084 +
27483276-27483492,27483991-27484121,27484685-27484740,
27484834-27484891,27484970-27485113,27485270-27485353,
27485434-27485514,27485776-27485889,27486196-27486281,
27486376-27486436,27487343-27487525,27487987-27488038,
27488080-27488135,27488197-27488258,27488498-27488581,
27488899-27489030,27490220-27490316
Length = 565
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 56 HQVDTCRRDEPSPRP 12
H+V C R EP+PRP
Sbjct: 48 HEVACCVRTEPAPRP 62
>05_06_0185 -
26201013-26201429,26201537-26201695,26201774-26202601,
26203483-26203605
Length = 508
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 104 LHTLTDVPVHEGALSVHQVDTCRR 33
L T+ D VH LSVH+V C R
Sbjct: 432 LDTIHDDYVHPDRLSVHEVGFCGR 455
>04_02_0004 -
8430902-8431210,8431295-8431445,8431542-8431830,
8431873-8432083,8432184-8432380,8432454-8432555,
8432666-8433998
Length = 863
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 83 PVHEGALSVHQVDTCRRDEPSPRP 12
P+HE +H C +D+PS RP
Sbjct: 784 PLHEVLRCIHLGLLCIQDQPSARP 807
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 109 PSSIPSPTYQCTKARLAYIKSTLVVETSPALGPD 8
P+++ +PT +K +L+ TSPAL P+
Sbjct: 200 PAAVIAPTKSVSKVKLSNSVPKANFSTSPALSPE 233
>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
Length = 821
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 63 KRAFVHWYVGEGM 101
KR +HW++GEG+
Sbjct: 143 KRLLIHWWLGEGI 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,017
Number of Sequences: 37544
Number of extensions: 41385
Number of successful extensions: 143
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 14,793,348
effective HSP length: 17
effective length of database: 14,155,100
effective search space used: 268946900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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