Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_O01
(266 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0044 - 25150322-25151260 42 9e-05
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809... 28 0.89
03_05_0288 + 22761801-22761877,22762495-22762556,22763501-227635... 28 0.89
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 28 1.2
08_02_0996 - 23404595-23405596 27 2.7
03_02_0079 + 5485090-5485238,5486066-5486137,5486764-5486840,548... 26 3.6
02_05_0069 - 25576032-25576213,25576653-25576906,25577213-255772... 26 4.8
01_07_0264 - 42388455-42388565,42388656-42388688,42388792-423889... 26 4.8
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 25 6.3
05_07_0170 - 28128839-28130149 25 6.3
01_06_0824 - 32243495-32244319,32244449-32244859 25 6.3
12_02_1136 - 26381025-26381408,26381661-26381804,26382345-263824... 25 8.3
11_04_0372 + 16915047-16915406,16915493-16916341 25 8.3
10_08_0331 - 16831646-16834756 25 8.3
08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840 25 8.3
02_05_0955 - 33056171-33057256 25 8.3
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 25 8.3
>05_06_0044 - 25150322-25151260
Length = 312
Score = 41.5 bits (93), Expect = 9e-05
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = +1
Query: 28 HQFPPNMTKPGPFYVSPKSPKSVEFM-NVIDHFYYTESSNFDAKILRMPYRS-------N 183
H F P++T+ G F+VSP V FM H + + +LRM YR+
Sbjct: 92 HPFFPHLTEEGDFHVSPDHDVRVPFMAGSHQHAFMDVGCHPGFNVLRMMYRTGGAAGGDK 151
Query: 184 KYAMYIIVPNFLTGLPRVLNSLS 252
+AMYI +P+ GLP + L+
Sbjct: 152 MFAMYIYLPDDRDGLPELARKLA 174
>05_03_0074 +
8095355-8096575,8096664-8096901,8096990-8097667,
8097787-8097974
Length = 774
Score = 28.3 bits (60), Expect = 0.89
Identities = 11/42 (26%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 139 SNFDAKIL-RMPYRSNKYAMYIIVPNFLTGLPRVLNSLSDLR 261
S+FD + + ++P++ N+Y +++P G+ RV +S++ ++
Sbjct: 691 SDFDVEEMNQLPFQLNRYISDVVLPVATAGVERVFSSMNYIK 732
>03_05_0288 +
22761801-22761877,22762495-22762556,22763501-22763564,
22767651-22767720,22767958-22768041
Length = 118
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 37 PPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRM 168
PP + + GPF V+P+ P+S + + S +D K L +
Sbjct: 4 PPPLPRGGPFVVAPRPPRSGVSKPFVGEVLVGKISGYDEKGLHV 47
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 25 RHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDHF--YYTESSNFDAKILR 165
R P+ +PG FY P+SP+ + M ++ F YY + F + LR
Sbjct: 268 RDYLVPSRVQPGMFYALPQSPQLFKQMLMVSGFEKYYQIARCFRDEDLR 316
>08_02_0996 - 23404595-23405596
Length = 333
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 30 PVPTEYDKTWTILRIAEITKVRG 98
P+P YD WT+LR RG
Sbjct: 146 PLPAAYDDAWTVLRWVAADMQRG 168
>03_02_0079 +
5485090-5485238,5486066-5486137,5486764-5486840,
5486946-5486989,5487583-5487639,5487640-5487686,
5488010-5488184,5489501-5489662,5489845-5489883
Length = 273
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 160 LRMPYRSNKYAMYIIVPNFLTGLPRVLNSLSDL 258
LR P RS + +++P F TGLP L+S+ D+
Sbjct: 27 LRKPVRS----LLLLLPKFSTGLPVSLSSVFDV 55
>02_05_0069 -
25576032-25576213,25576653-25576906,25577213-25577270,
25577569-25577662,25578168-25578219,25578559-25578618,
25578718-25578797
Length = 259
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 40 PNMTKPGPFYVSPKSPKSVE 99
PNM+KP F ++P+ P E
Sbjct: 118 PNMSKPSAFSITPEGPDPPE 137
>01_07_0264 -
42388455-42388565,42388656-42388688,42388792-42388905,
42389011-42389100,42389173-42389268,42389363-42389404,
42389498-42389608,42392258-42392440,42392518-42392961
Length = 407
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 159 NLSVKITRFSVIEVIYNVHELHGLW*FRRYVEWSRFCHIRWELV 28
+++V + +F+ +E ++++ E+ R EW F H W+LV
Sbjct: 281 HMTVGLAQFAYMEYVWDLREIS------RLKEWPYFLHEIWKLV 318
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 25 RHQFPPNMTKPGPFYVSPKSPKSV 96
R + PP M PGP + P+S +V
Sbjct: 48 RRRPPPKMLPPGPGHTLPRSSSNV 71
>05_07_0170 - 28128839-28130149
Length = 436
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 1 CCINSARGRHQFPPNMTKPGPFYVSPKSPKSVEFMNVIDH 120
C + + HQ P ++ KPGP V + + N D+
Sbjct: 217 CMLTANPASHQHPNDVGKPGPVMVVDVASEEYRTYNPADY 256
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 25.4 bits (53), Expect = 6.3
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Frame = +1
Query: 31 QFPPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKILRMPY-RSNK------- 186
+F T FY+ S FM+ Y + + K+LR+PY R +
Sbjct: 187 KFDARSTSDDVFYLPDGGHVSAPFMSSGKWQYIACRAGY--KVLRLPYARGGRGRGRDTG 244
Query: 187 --YAMYIIVPNFLTGLPRVLNSL 249
++MYI +P+ GLP +L L
Sbjct: 245 RLFSMYIYLPDERHGLPDMLRKL 267
>12_02_1136 -
26381025-26381408,26381661-26381804,26382345-26382413,
26382537-26382637,26383488-26383493,26383759-26383996
Length = 313
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 22 GRHQFPPNMTKPGPFYVSPKSPKSV 96
GR PPNM P YV+ K ++
Sbjct: 141 GRILIPPNMPADAPIYVNAKQCSAI 165
>11_04_0372 + 16915047-16915406,16915493-16916341
Length = 402
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 37 PPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFD 150
P N TK V+ +S K + + + +FY E +FD
Sbjct: 316 PMNTTKLCMIVVTTRSEKVAKLVQTMSNFYNLECLSFD 353
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 124 YYTESSN-FDAKILRMPYRSNKYAMYIIVPNFLTG-LPRVLNSLSDLRV 264
Y S+N F +I R K +I N LTG +P L S+S LR+
Sbjct: 248 YLNLSNNEFSGRIPASLRRLTKLQDLLIAANNLTGGVPEFLGSMSQLRI 296
>08_02_0079 + 12005624-12005921,12006144-12006550,12007250-12007840
Length = 431
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 201 DIHRVFVTSIWHPQNLSVKITRFSVIEVIY 112
D+HR + IW+PQ+ S +++Y
Sbjct: 85 DVHRNHLPKIWYPQDAYKTPIGMSPYQIVY 114
>02_05_0955 - 33056171-33057256
Length = 361
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 24 ASPVPTEYDKTWTILRIA 77
A PVP YD W LR A
Sbjct: 136 AHPVPAAYDDAWAALRWA 153
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 37 PPNMTKPGPFYVSPKSPKSVEFMNVIDHFYYTESSNFDAKI 159
PP T P P P+ E DH+ SS FD I
Sbjct: 255 PPPPTSPRHGASDPAQPRHQERRLASDHYSCVPSSEFDHAI 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,665,995
Number of Sequences: 37544
Number of extensions: 111307
Number of successful extensions: 346
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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