Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N24
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 28 0.28
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 0.64
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 0.84
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 3.4
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 24 4.5
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 24 4.5
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 24 5.9
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 5.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 5.9
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 23 7.9
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 28.3 bits (60), Expect = 0.28
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 116 SETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQP 226
SET S S K+G T+RR S R +KLK +P
Sbjct: 2 SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.1 bits (57), Expect = 0.64
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 8 VGILWLHHSPMWRRNPPQPQPAVSRSR 88
VG L L+ SP + QPQP SRSR
Sbjct: 266 VGSLRLYRSPSIPNDVEQPQPQSSRSR 292
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 0.84
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 74 VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSWLSK 241
++ S ++RG T E V + G T+ Y SLS+ ++K +N P SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 3.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 217 SWAFQLSGSSYRQTYI*PSCGTSCFWRNG 131
SW QLS SS+ +C SC RNG
Sbjct: 196 SWVVQLSFSSWNVVGDSATCLLSCSSRNG 224
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 4.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 299 NDFLLFSRTVRVPPFFSPPICLT 231
ND L ++TV P FF+P +C T
Sbjct: 300 NDVEL-AKTVGTPAFFAPELCWT 321
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 24.2 bits (50), Expect = 4.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 192 LLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFANFL 85
LL LI+ +L + FG T Y +S +I+ + N L
Sbjct: 27 LLVLSLIFYILYI--CFGTTSYILSGIILGAYVNSL 60
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -2
Query: 222 WFLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 91
W L F + + ++VV F T+Y++ +I+ +F N
Sbjct: 345 WILPAFRILFSIFMASMSVIIVVSEVFLHTQYSLVGIILQKFTN 388
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 23.8 bits (49), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 210 LFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFA 94
L S R + + + LL + A+G E SE +IP+F+
Sbjct: 434 LRSKRSIKQEPWVRELLEIFIAYGYFEVPESEEVIPKFS 472
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = -2
Query: 171 YSLLVVHP---AFGETEYTVSEVII 106
YSL V+H FG+T+YT+S +++
Sbjct: 1006 YSLSVLHLDGIKFGDTQYTISGMLM 1030
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 280 AGLYECLHSFHRLFA*PRRLVSW 212
AG +ECLH F F+ P + W
Sbjct: 420 AGAFECLHVFS--FSSPVNCIDW 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,148
Number of Sequences: 5004
Number of extensions: 23403
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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