Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N24
(310 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 0.74
01_04_0134 - 16481035-16481150,16481678-16481746,16482184-164825... 29 0.98
03_06_0094 + 31610866-31611288 28 1.3
03_05_1011 + 29658144-29658310,29659531-29659676,29660526-296606... 28 1.3
01_07_0229 + 42161770-42164562 28 1.3
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 27 3.0
01_06_0936 - 33174598-33174803,33174897-33174987 27 3.0
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 27 4.0
08_01_0086 - 629043-629594 26 5.2
07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492... 26 5.2
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 26 6.9
06_03_0039 + 15791968-15792036,15793317-15793847,15799797-158001... 26 6.9
04_04_0699 - 27345243-27346199 26 6.9
02_05_1030 + 33623372-33623975,33624098-33624105 26 6.9
09_06_0110 + 20923523-20924065 25 9.2
01_05_0490 + 22672241-22674679 25 9.2
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 29.1 bits (62), Expect = 0.74
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 32 SPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRL--YISLSVRRTRKL 205
+P R PP P PA +R+ K A + + P CT L Y++ V+R K
Sbjct: 595 APSKSRAPPTPPPAHTRATKKAK-----VDAAKNKDPGYDCTQEELDAYVASEVKRQFKP 649
Query: 206 KSPRNQ 223
+SP +
Sbjct: 650 RSPEKK 655
>01_04_0134 -
16481035-16481150,16481678-16481746,16482184-16482503,
16482566-16482588
Length = 175
Score = 28.7 bits (61), Expect = 0.98
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 39 CGGETRRSRSRRCQEAESW 95
CGG RRSR RC A W
Sbjct: 60 CGGGARRSRGERCGMATPW 78
>03_06_0094 + 31610866-31611288
Length = 140
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 62 PQPAVSRSRKLANRGIMTSE 121
P+PAV+R R++A+RG+ S+
Sbjct: 109 PKPAVARKRRVASRGVRASK 128
>03_05_1011 +
29658144-29658310,29659531-29659676,29660526-29660602,
29660682-29660804,29661817-29661924,29661995-29662075,
29662157-29662309,29662469-29662540,29662745-29662863,
29662958-29663071,29663176-29663221,29664865-29664933,
29665662-29665808,29666410-29666706
Length = 572
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 47 RNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYIS 178
R P+P VSRSR L I SE +V P C + R Y+S
Sbjct: 251 RATPKPINEVSRSRSLQEDYIRLSEP--TVRPTINCFSYRYYLS 292
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 119 ETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 211
+T + SPKA T R+ Y+S S+R T LKS
Sbjct: 890 DTSVASSPKAFFTKRQPYLSSSIRYTSFLKS 920
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 23 LHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSV 187
LH + R PP P P + RK + I V++ S GC Y++ V
Sbjct: 25 LHAAVAGARAPPPPPPPGNCQRKCGDVDIPYPFGVWNGSESDGCAVPGFYLNCDV 79
>01_06_0936 - 33174598-33174803,33174897-33174987
Length = 98
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 17 LWLHHSPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCT 157
L HH + + P PA++ ++ G+ SET +SVS AG T
Sbjct: 26 LTAHHGYVVVEDVKAPVPALTCNKV---HGVQASETCFSVSQSAGLT 69
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 56 PQPQPAVSRSRKLANRGIMTSETVYSV 136
P P P +RSR+ N GI+ TV V
Sbjct: 252 PLPPPRSNRSRRAKNAGIVAGATVAGV 278
>08_01_0086 - 629043-629594
Length = 183
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = -1
Query: 160 CGTSCFWRNGVHRFRGHNS 104
CG C+WR G RG +
Sbjct: 134 CGDGCWWRGGAEERRGEGA 152
>07_03_1552 -
27648193-27648307,27648384-27648431,27649140-27649234,
27649311-27649376,27649721-27649810,27650210-27650437,
27650572-27650605,27651106-27651611
Length = 393
Score = 26.2 bits (55), Expect = 5.2
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -2
Query: 231 HDGWFLGLFSFRVLLTDKLIYSLLVVHPA---FGETEYTVSEVIIPRFANFLLLDTAGC 64
H GW LG +F + L+ LLV H F T++T V I FA + GC
Sbjct: 133 HPGWLLGYRAFALAAAVALLVRLLVGHGIDVFFFYTQWTFLLVTI-YFAFATAISAHGC 190
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 157 GTSCFWRNGVHRFRG 113
G C W GVHRF G
Sbjct: 466 GEPCAWEFGVHRFNG 480
>06_03_0039 +
15791968-15792036,15793317-15793847,15799797-15800105,
15800256-15800772,15800964-15801163,15801303-15801398
Length = 573
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 159 VVHPAFGETE---YTVSEVIIPRFANFLLLDTAGCGCGGF 49
V HP +T + +++ I ++ ++ AG GCGGF
Sbjct: 276 VAHPTHYDTPLKGFKANKIPITEIHHYAVIVNAGNGCGGF 315
>04_04_0699 - 27345243-27346199
Length = 318
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +2
Query: 56 PQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKSPRNQPSW 232
P P+PA S S ++ T+ T S S R+ + + + L P +Q +W
Sbjct: 234 PSPEPATSESSFSSSSSCTTTTTSSSTSSSGSPKRRKRGEAAAASMSMPLVPPPSQLNW 292
>02_05_1030 + 33623372-33623975,33624098-33624105
Length = 203
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 23 LHHSPMWRRNPPQPQPAVSRSRKLANRGIM 112
L +P R+PP P P RK+ R ++
Sbjct: 81 LAQAPQQHRSPPSPSPRKMICRKIVRRSLI 110
>09_06_0110 + 20923523-20924065
Length = 180
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 56 PQPQPAVSRSRKLANRGIMTSETVYSVSPKAGC 154
P + A + S++ A T++++YSVSP C
Sbjct: 103 PSKKRAAAASQQEAAEWTTTTDSLYSVSPPPSC 135
>01_05_0490 + 22672241-22674679
Length = 812
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +2
Query: 32 SPMWRRNPPQPQPAVSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLKS 211
+P R PP P P S L +G S ++SV+P + RR+RK
Sbjct: 602 APPRRPPPPPPPPPSSIFYNLFKKGGSKSRRIHSVAPPQPPPPP----PPTTRRSRKPPQ 657
Query: 212 PRNQPS 229
P ++P+
Sbjct: 658 PPSRPA 663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,283,896
Number of Sequences: 37544
Number of extensions: 173213
Number of successful extensions: 599
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -