Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N24
(310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 31 0.22
Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical pr... 29 0.66
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 1.5
Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical pr... 27 2.7
AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical... 27 3.5
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 26 4.7
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 26 4.7
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 26 4.7
U13071-4|AAA20671.1| 510|Caenorhabditis elegans Hypothetical pr... 26 6.2
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 25 8.1
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 103 RNYDLGNGVLRFSKSRMYHKK 165
RN+DL GVLRFS SR+ KK
Sbjct: 12 RNFDLSPGVLRFSASRLRLKK 32
>Z73974-2|CAA98271.2| 713|Caenorhabditis elegans Hypothetical
protein F29F11.4 protein.
Length = 713
Score = 29.1 bits (62), Expect = 0.66
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 53 PPQPQPAVSRSRKLAN--RGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLK 208
P P P SR LA+ R ++ E Y P+ T RRL SLS + RK+K
Sbjct: 613 PGMPPPPPSRPLNLASPLRTLLEKEQKYDEDPEIQLTPRRLN-SLSDIQARKVK 665
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 12 EYYGSTTAQCGGETRRSRSRRCQEAESWQTEEL*P 116
E+ G + QCGG R R R C++ E+ + EE P
Sbjct: 636 EWQGECSQQCGGCGHRLRKRECKK-EACRKEEKRP 669
>Z71177-5|CAA94871.2| 531|Caenorhabditis elegans Hypothetical
protein AC3.8 protein.
Length = 531
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 219 FLGLFSFRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFAN 91
FL +F F L + L Y+ LVV P FG + + AN
Sbjct: 4 FLLVFLFFALYCNVLAYNYLVVAPVFGYSHMKFMNKVADTLAN 46
>AC084197-25|AAK68591.1| 609|Caenorhabditis elegans Hypothetical
protein Y73B6BL.19 protein.
Length = 609
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 24 STTAQCGGETRRSRSRRCQEAESWQTEEL*PRKRCTPFLQKQD 152
S TA G+T+R R C E+ + EEL R T F Q D
Sbjct: 511 SETASLKGKTKRKRRLCCVSKENEEMEELDRETRVT-FNQNMD 552
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical
protein F39B2.4b protein.
Length = 1589
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 210 LFSFRVLLTDKLIYSLLVVHPAFGE 136
+F F+VL D+L+ S L++HPA E
Sbjct: 911 VFQFQVLRADRLLLS-LIMHPATDE 934
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical
protein F39B2.4a protein.
Length = 1587
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 210 LFSFRVLLTDKLIYSLLVVHPAFGE 136
+F F+VL D+L+ S L++HPA E
Sbjct: 909 VFQFQVLRADRLLLS-LIMHPATDE 932
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 210 LFSFRVLLTDKLIYSLLVVHPAFGE 136
+F F+VL D+L+ S L++HPA E
Sbjct: 909 VFQFQVLRADRLLLS-LIMHPATDE 932
>U13071-4|AAA20671.1| 510|Caenorhabditis elegans Hypothetical
protein T22F7.1 protein.
Length = 510
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 287 LFSRTVRVPPFFSPPICLTTT 225
LFS V +P + PICLT T
Sbjct: 374 LFSGVVELPAYLFIPICLTRT 394
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 36 QCGGETRRSRSRRCQEAESWQTEEL*PRKRCTPFLQKQDVPQ 161
QC + ++ + CQ+ ++ + +++CTP Q+ PQ
Sbjct: 279 QCAPQCQQQSAPACQQCQTSCQQTQQCQQQCTPQCQQPSAPQ 320
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/42 (23%), Positives = 22/42 (52%)
Frame = +3
Query: 36 QCGGETRRSRSRRCQEAESWQTEEL*PRKRCTPFLQKQDVPQ 161
QC + ++ + CQ+ ++ + +++CTP Q+ PQ
Sbjct: 279 QCAPQCQQQSAPACQQCQTSCQQTQQCQQQCTPQCQQPSAPQ 320
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,433,161
Number of Sequences: 27780
Number of extensions: 135177
Number of successful extensions: 460
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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