Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N24
         (310 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   0.48 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.9  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.8 bits (49), Expect = 0.48
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 96  QTEEL*PRKRCTPFLQKQDVPQEGYI 173
           +T  L PRKRC   L+  ++ + G I
Sbjct: 460 ETLILPPRKRCKMILESMEIERNGLI 485


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  KLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRKLK 208
           K+  + ++ S+T  S   + GC + RL+        +K+K
Sbjct: 256 KMTPQSLLPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIK 295


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 5   EVGILWLHHSP 37
           +V  LWL+HSP
Sbjct: 656 QVLALWLNHSP 666


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,136
Number of Sequences: 438
Number of extensions: 1690
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)