Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N23
         (275 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   4.6  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    23   6.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   8.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    23   8.0  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 90  FISVKCDYFY 61
           F S KCDYFY
Sbjct: 640 FASTKCDYFY 649


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 178 KNVFKRVNMCLNLYTKK 128
           KN ++RVN+CL+  + K
Sbjct: 19  KNAYRRVNLCLSENSSK 35


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 211 RVLFPI*LKLIKNVFKRVNMCLNLYTKKNYVI 116
           RVLFP+ ++ IK ++  +N   N     +Y++
Sbjct: 104 RVLFPVGVQYIKELYTLLNESSNNTWHFHYIV 135


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 161 SFKDIFYQFQLYWK*YPVLSMLFIICTFFYILCRD 265
           ++K   Y+F L +  Y   ++LF++C    I+ RD
Sbjct: 168 AWKPWTYKFSLNYLIYTAFALLFVLCA--AIMVRD 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 965,274
Number of Sequences: 5004
Number of extensions: 15197
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)