Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N23
         (275 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0313 - 2328495-2328936,2330562-2330881                           25   6.5  
12_01_1034 - 10638984-10639376,10639905-10640093                       25   8.7  
01_05_0085 - 17995800-17995985,17996724-17996823,17996919-179971...    25   8.7  

>11_01_0313 - 2328495-2328936,2330562-2330881
          Length = 253

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 193 ILEIIPCSVHAFHNLYIFLYTMQRSS 270
           +L I+P   H FH L I ++ MQ S+
Sbjct: 120 VLRILPYCGHNFHALCIDIWLMQHST 145


>12_01_1034 - 10638984-10639376,10639905-10640093
          Length = 193

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 253 YIKKCTNYEKHG 218
           ++++CT Y+KHG
Sbjct: 65  FVRRCTRYQKHG 76


>01_05_0085 -
           17995800-17995985,17996724-17996823,17996919-17997115,
           17997836-17997916,17998046-17998492,17998774-17998920
          Length = 385

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 271 YWISA*YIKKCTNYEKHGQNRVLF 200
           YWIS+ Y K C  + +  +N +L+
Sbjct: 160 YWISSQYHKACQEFAEFYKNALLY 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,238,389
Number of Sequences: 37544
Number of extensions: 70308
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)