Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N22
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    27   1.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   2.7  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   6.1  

>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 345 DEDQIPSYFHFQIFFPVIFHVDDYLE 268
           DE+++  Y +F+  F +IF   DY++
Sbjct: 640 DEEELEGYLYFESGFRIIFSNGDYID 665


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 250  YSDDDQFQVVVNVKDYRKEDLKVKVTGDLIFVQGSQ 357
            +SD    +V+V +   R +DLK+    DLIF   SQ
Sbjct: 1434 FSDLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQ 1469


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 124 PPPITSITDDDLSFPWMSISPFSLFA 201
           PPP+T  T  D  F   +ISP + F+
Sbjct: 371 PPPLTPSTSRDYPFSASTISPSTPFS 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,243
Number of Sequences: 5004
Number of extensions: 36430
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)