Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N22
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0326 + 29274287-29274428,29274577-29275379 41 6e-04
07_02_0001 + 11646955-11647085,11647169-11647271,11647369-11647407 29 1.5
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 29 2.6
09_02_0568 + 10748227-10748434,10749004-10749398 29 2.6
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 29 2.6
01_02_0068 - 10803815-10804391,10804487-10804722,10804808-108049... 29 2.6
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220... 28 3.5
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 3.5
10_08_0605 + 19158167-19158309,19158726-19158834,19159099-191592... 28 4.6
05_01_0253 + 1934043-1934201,1934456-1934536,1935008-1935199,193... 28 4.6
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 27 6.1
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 27 6.1
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 27 6.1
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 27 6.1
10_06_0059 - 10149439-10149477,10150001-10150927 27 8.1
08_02_1082 + 24225592-24226422 27 8.1
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 27 8.1
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 27 8.1
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 27 8.1
>05_07_0326 + 29274287-29274428,29274577-29275379
Length = 314
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 262 DQFQVVVNVKDYRKEDLKVKVTGD-LIFVQGSQEANNNNRDVFATRFHHTYNKPSNASSS 438
+ F + + + ++KED +V+V G + V+G + A + + TRFH + PSNA+
Sbjct: 38 NNFLLRLYLTGFKKEDFRVQVDGTGKLTVRGQRPAAGSKHN---TRFHKVFQLPSNANID 94
Query: 439 LITGKLTTDGFLVVTVP 489
ITG+ L +TVP
Sbjct: 95 DITGRFEA-SVLTITVP 110
>07_02_0001 + 11646955-11647085,11647169-11647271,11647369-11647407
Length = 90
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 215 SFHNGAKRLKGDMLIHGNERSSSVIEVIGGGMSD 114
SFH G R G M+ GNER ++ GG D
Sbjct: 44 SFHGGGLRWTGSMVQEGNERPCCLVRGWGGDEVD 77
>12_02_0035 -
12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P FA I PRI
Sbjct: 182 PLSLLNDKDCPFSFSGKKPKTVSEPSVSLSPEFAAIQPRI 221
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 154 DLSFPWMSISPFSLFAPLWKLIPSFADIGPRIYSDDDQFQVVVNVKDYRKEDLKVKVTGD 333
D P+ I+PF+L P K P+ + RI DDD ++ +V + +E LKV++ D
Sbjct: 59 DTGHPF-GIAPFALVHP--KFPPTSGNRW-RITEDDDYVKLWFHVGEIDREKLKVRIEHD 114
Query: 334 LIFV 345
+ +
Sbjct: 115 TVLL 118
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 464 SVVNLPVISELLALEGLLYVWWNLVANTSRLL 369
S+ + ++ LL L+G Y+W V TSR+L
Sbjct: 523 SIPSYAELTNLLTLDGTRYIWHGDVVQTSRIL 554
>01_02_0068 -
10803815-10804391,10804487-10804722,10804808-10804978,
10805709-10805867
Length = 380
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Frame = +1
Query: 118 DIPPPITSITDDDLSFPWMSISPFSLFAPLWKL-------IPSFADIGPRIYSDDDQFQV 276
++ PP+ ++ + S + + + AP+ L SFADIGPR Y +D+ ++
Sbjct: 30 EVSPPVEEMSPEAASEAAIEVPELMVKAPVESLQFSPNIRSGSFADIGPRRYMEDEHIRI 89
>12_02_0875 -
23920023-23920967,23921045-23921599,23921678-23922083,
23922175-23922452
Length = 727
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +3
Query: 33 HNVFTACSS---GLWFRPPSGGGGLPGFR 110
H +F C S W R +GGGG GFR
Sbjct: 339 HRIFKLCGSPGDAYWRRAAAGGGGGAGFR 367
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLI 219
P TS+ +++S P+M+I+ FS W L+
Sbjct: 680 PSTSLPMEEMSEPYMAINTFSQLLTQWSLV 709
>10_08_0605 +
19158167-19158309,19158726-19158834,19159099-19159224,
19159388-19159543,19159623-19159805,19159904-19160020,
19160528-19160581,19160661-19160732,19160947-19161058,
19161188-19161284,19161434-19161528,19162093-19162167,
19162307-19162390,19162602-19162700,19163167-19163207
Length = 520
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 60 GLWFRPPSGGGGLPG 104
GLW PP+GGGG G
Sbjct: 27 GLWLPPPTGGGGRLG 41
>05_01_0253 +
1934043-1934201,1934456-1934536,1935008-1935199,
1935313-1935548,1935638-1936220
Length = 416
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 223 SFADIGPRIYSDDDQFQV 276
SFADIGPR Y +D+ ++
Sbjct: 106 SFADIGPRRYMEDEHIRI 123
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 27.5 bits (58), Expect = 6.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 239 PMSAKLGISFHNGAKRLKGDMLIHGNERSSSVIEVIGGGMSD 114
P++ K + F+ K LKG +L+ E + + + GG+ D
Sbjct: 651 PLTGKEHLFFYGRLKNLKGAVLVKAVEDALKSVNLFHGGVGD 692
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P F I PRI
Sbjct: 157 PVSLLNDKDCPFSFSGKKPKAVSEPSVSLSPEFTAIQPRI 196
>02_05_0740 -
31404004-31404180,31404365-31405261,31405351-31405978,
31405997-31406468,31406575-31407052
Length = 883
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P F I PRI
Sbjct: 69 PVSLLNDKDCPFSFSGKKPKAVSEPSVSLSPEFTAIQPRI 108
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P F I PRI
Sbjct: 170 PVSLLNDKDCPFSFSGKKPKAVSEPSVSLSPEFTAIQPRI 209
>10_06_0059 - 10149439-10149477,10150001-10150927
Length = 321
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 253 SDDDQFQVVVNVKDYRKEDLKVKVTGDLI 339
S+DD V++++ ++ K+D KV + DLI
Sbjct: 276 SEDDLLDVLLDMSEHGKDDGKVAIDRDLI 304
>08_02_1082 + 24225592-24226422
Length = 276
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/45 (37%), Positives = 18/45 (40%)
Frame = +1
Query: 109 DRSDIPPPITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGP 243
D SD P S+ D DL F W P A W FAD P
Sbjct: 226 DFSDYPSITKSLADPDLHFEWP--PPAFDMASYWPAGAGFADPDP 268
>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
Length = 945
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P F I PRI
Sbjct: 182 PLSLLNDKDCPFSFSGKKPKTVSEPSVSLSPEFTAIQPRI 221
>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
Length = 963
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P F I PRI
Sbjct: 182 PLSLLNDKDCPFSFSGKKPKTVSEPSVSLSPGFTAIQPRI 221
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 27.1 bits (57), Expect = 8.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 130 PITSITDDDLSFPWMSISPFSLFAPLWKLIPSFADIGPRI 249
P++ + D D F + P ++ P L P F I PRI
Sbjct: 182 PLSLLNDKDCPFSFSGKKPKTVSEPSVSLSPEFTAIQPRI 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,375,062
Number of Sequences: 37544
Number of extensions: 264542
Number of successful extensions: 724
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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