Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N21
(362 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 44 7e-06
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 36 0.002
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 36 0.003
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 36 0.003
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 1.6
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 2.1
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 2.7
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 3.6
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 25 4.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 24 6.3
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 44.0 bits (99), Expect = 7e-06
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Frame = +1
Query: 10 SSKIISKFLPXRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGE 180
+S+ ++ P ++K + +PKRP SAY L+ + R +IK E G K V E+ K E
Sbjct: 97 TSEAVASMTPNKRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHE 155
Query: 181 MWKSMK--DKSIWXXXXXXXXXQYAKDLESYNAN 276
W S+ D+ + Y +++ +YNA+
Sbjct: 156 KWGSLSEDDRKTYEEEASKLREAYEEEMAAYNAS 189
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 35.9 bits (79), Expect = 0.002
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 43 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 195
RKK+ T PKR MSA+M + RE++K+++P ++ G+ WK +
Sbjct: 9 RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 35.5 bits (78), Expect = 0.003
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 43 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 192
RK T++ RP +A++L+ + +P + ++++K GEMW++
Sbjct: 94 RKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 35.5 bits (78), Expect = 0.003
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 43 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 192
RK T++ RP +A++L+ + +P + ++++K GEMW++
Sbjct: 94 RKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 26.2 bits (55), Expect = 1.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +1
Query: 61 TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 186
TDKP + S + L+ E +S+HP + V + G E W
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESW 162
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 6 RQFKNNFKIFAXQEKK*NDGQAEAAYVSL-YAVAQ 107
++F+N K FA + ++ NDG +A + +L YA +Q
Sbjct: 97 KRFRNLLKTFACRIERANDGDHQAIWQTLRYAYSQ 131
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 2.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 243 LFFSLGCFLFPNTFIFH*FPHFTSFFGYFSDFQPRM 136
LF+ L C P F H T+F YF+ P +
Sbjct: 211 LFYDLNCQDIPEFFEDHMSEFMTAFLNYFTYTNPSL 246
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 3.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -1
Query: 356 LDLVGPAFWPFFPRFCAFLXXXXXXXPLALYDSKSLAY 243
+++ G F F P F +F +A+ DS+SL Y
Sbjct: 224 INITGSVFDNFIPSFFSFGTHGDGIKQIAVDDSRSLLY 261
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 64 DKPKRPMSAYMLWLNSAREQIKSE 135
D PK+ +AY+L LN + E KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 24.2 bits (50), Expect = 6.3
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 16 KIISKFLPXRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 195
K + +P KN +K + S +++ + AR+Q+ + H L +++A + +W
Sbjct: 4 KALDSRIPTLIKNGCQEKQR---SFFVVVGDRARDQVVNLHWLLSQSKVAARPNVLWMYK 60
Query: 196 KD 201
KD
Sbjct: 61 KD 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.124 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,899
Number of Sequences: 5004
Number of extensions: 23656
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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