Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N21
(362 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 53 8e-08
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 52 1e-07
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 50 4e-07
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 49 1e-06
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 48 2e-06
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 46 7e-06
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 42 1e-04
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 40 6e-04
08_02_1378 + 26536082-26537803 31 0.21
07_03_1668 - 28487357-28487838,28487933-28488101 28 2.6
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 27 6.0
01_01_0397 + 3034059-3034691 27 6.0
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 52.8 bits (121), Expect = 8e-08
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 46 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKD 201
K K +KPKRP SA+ +++ R+ K +HP +K V+ I K GG+ WKSM D
Sbjct: 27 KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +1
Query: 67 KPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 204
K KRP +A+ L+++ R++ K+EHP K V+ +AK+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 50.4 bits (115), Expect = 4e-07
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +1
Query: 46 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXX 219
KK K + PKR M+ +M + + R +K+ +P L TEIAKK GEMW+ M ++K +
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEKQPYIQ 650
Query: 220 XXXXXXXQYAKDLESY 267
+Y K+ Y
Sbjct: 651 QSQVDKKRYEKESAVY 666
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 49.2 bits (112), Expect = 1e-06
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +1
Query: 46 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXX 219
KK K + PKR ++ +M + + R +K+ +P L TEIAKK GE W+ M ++K +
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKMTAEEKQPYVE 609
Query: 220 XXXXXXXQYAKDLESY 267
+YA++ +Y
Sbjct: 610 QSQVDKKRYAEESAAY 625
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 48.0 bits (109), Expect = 2e-06
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +1
Query: 43 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 204
RKK + KPKRP SA+ ++++ R++ ++ HP K V ++K GE W++M ++
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQ 78
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 46.4 bits (105), Expect = 7e-06
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = +1
Query: 7 GSSKIISKFLPXRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 186
G +K SK +KK K KPK+PMSAY ++ R + +E V EI + GE W
Sbjct: 264 GDNKKASKKGKKKKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEW 321
Query: 187 KSMK--DKSIWXXXXXXXXXQYAKDLESY 267
K+M +K+ + +Y ++ +Y
Sbjct: 322 KAMSEAEKAPFEAAARKQREEYQVEMAAY 350
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +1
Query: 64 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXX 237
++PK+P S+++L+ AR Q+ E PG+ + + WK + +K W
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEAM 471
Query: 238 XQYAKDLESY 267
Y +D+E Y
Sbjct: 472 AAYKRDMEEY 481
Score = 37.5 bits (83), Expect = 0.003
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 49 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 195
K K + K+P AY+LW +IK E P E++ G WK++
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 41.9 bits (94), Expect = 1e-04
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 43 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSMKDK 204
RKK KPKR ++ + +L R Q +HP K V + K GE W++M D+
Sbjct: 16 RKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMSDE 70
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 39.9 bits (89), Expect = 6e-04
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Frame = +1
Query: 37 PXRKKNK-MTDK--PKRPMSAYMLWLNSAREQIKSEHPGLK-VTEIAKKGGEMWKSM 195
P RKK + + D+ PK+P +A+ ++ R+ K E+P +K + E+ K GE W +M
Sbjct: 35 PSRKKGQPLVDRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTM 91
>08_02_1378 + 26536082-26537803
Length = 573
Score = 31.5 bits (68), Expect = 0.21
Identities = 22/58 (37%), Positives = 29/58 (50%)
Frame = -1
Query: 344 GPAFWPFFPRFCAFLXXXXXXXPLALYDSKSLAYCSLALAAFSSQILLSFIDFHISPP 171
G AF P CAFL PL+L ++ A+CS+A S L+S I H+S P
Sbjct: 111 GSAFLPALASACAFLVARSHRLPLSLAEAAETAFCSVA----SLADLVSRIASHLSLP 164
>07_03_1668 - 28487357-28487838,28487933-28488101
Length = 216
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 19 IISKFLPXRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEH 138
IIS F+P R+ ++ KR + A W ++++E +H
Sbjct: 6 IISDFIPQREAHRAATGSKRALCASDFWPSASQEAADFDH 45
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 70 PKRPMSAYMLWLNSAREQIKSEHPGLK 150
P R + +LWL E + S HPG +
Sbjct: 198 PSRRCVSLLLWLEERYETVYSRHPGFQ 224
>01_01_0397 + 3034059-3034691
Length = 210
Score = 26.6 bits (56), Expect = 6.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 67 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKG 174
K R + A ++ + ++R+ IKS G+K + AK+G
Sbjct: 26 KLARTVPAILMRIGTSRKAIKSTMKGMKAMKAAKRG 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.124 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,398,631
Number of Sequences: 37544
Number of extensions: 142229
Number of successful extensions: 264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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