Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N21
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.5  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   3.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 353 DLVGPAFWPFFPRFC 309
           DL+G  +W F PRFC
Sbjct: 86  DLLG--YWVFGPRFC 98


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 97  LWLNSAREQIKSEHPGLKV 153
           +W  + R + K ++PGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 172 GGEMWKSMKDK 204
           GGE+W  ++DK
Sbjct: 450 GGELWTVLRDK 460


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +1

Query: 10  SSKIISKFLPXRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGG 177
           +S ++   L     ++  D+   P    ML+L      ++   PG K+T+    GG
Sbjct: 337 ASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGG 392


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +1

Query: 10  SSKIISKFLPXRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGG 177
           +S ++   L     ++  D+   P    ML+L      ++   PG K+T+    GG
Sbjct: 337 ASSVVLTVLVLNFHHRTPDRYVMPSWIKMLFLQWLPCLLRMSRPGKKITKKTILGG 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.124    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,949
Number of Sequences: 438
Number of extensions: 1466
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)