Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N20
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 0.81
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 2.5
SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz... 25 3.3
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 24 7.6
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 24 7.6
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 24 10.0
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom... 24 10.0
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha... 24 10.0
SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||... 24 10.0
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 0.81
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -3
Query: 169 PIATKG*PSTVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 14
P+ PST+ FN SP+P A S+ + S K A +++N VN
Sbjct: 313 PVLQPPAPSTLQFNPSPSPAAPSYPP-------VDASVKQAADLDQAINFVN 357
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 2.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +3
Query: 153 PLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDA-KEIILEN---W*KMNNYQTFAS 320
P V + + ND+ IEK E+ N F +A KEII +N W K Y+
Sbjct: 549 PTVNVADDMKDGTNNDVEIEKNSTEIDN--ITFNDEADKEIIEQNRRKWLKSKGYKVAKK 606
Query: 321 K 323
K
Sbjct: 607 K 607
>SPCC550.06c |hsp10||mitochondrial heat shock protein
Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 104
Score = 25.4 bits (53), Expect = 3.3
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 33 RAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGTHVIIQA 191
+ A G L E ++ + R++ + G G E L QP VA+G V++ A
Sbjct: 28 KTASGIFLPEKSVEKLSEGRVI---SVGKGGYNKEGKLAQPSVAVGDRVLLPA 77
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 24.2 bits (50), Expect = 7.6
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = -3
Query: 238 RLCSSNLVFSMVISFFA*IITCVPIATKG*PSTVSFNASPTPNASSWSNLLCTISWISPS 59
RL +S FS V SF + VPI VSF A+ N L TI+ S S
Sbjct: 135 RLLTSRASFSQVASFMGVCVWSVPIGI-----FVSFTAA--------DNTLPTITTPSSS 181
Query: 58 TKDAPPAARSVNTVNL 11
+ DA + S T N+
Sbjct: 182 SPDAYSSGSSRRTSNV 197
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 24.2 bits (50), Expect = 7.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 117 VGEALNETVLGQPLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDA 263
V + L + L Q G + KN+ T++ K LH F+ DA
Sbjct: 153 VEKKLKQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDA 201
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 84 HRRLLHDDAFGVGEALNETVLGQPLVAIGTHV 179
H + L D+ G+G A +L + L IG H+
Sbjct: 1312 HMKRLRKDSSGLGRAELVKLLTECLTTIGKHI 1343
>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 287
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 60 EGEIQLMVHRRLLHDDAF 113
+GEI L ++ LHDD+F
Sbjct: 135 KGEIMLKANKGWLHDDSF 152
>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 23.8 bits (49), Expect = 10.0
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 192 KNDITIEKTKLELHNRPAVFVSDAKEIILENW*KMNNYQTFASK-TLPDGLHLLTLEP 362
KND+ + K E RP V++ L + K+ Q+F P+ LTL+P
Sbjct: 2 KNDLILRAAKGEEVERPPVWIMRQAGRYLPEYHKLRAKQSFFEMCQTPETACELTLQP 59
>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 186
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 198 DITIEKTKLELHNRPAVFVSDAKEIILENW 287
DI +EK+K + R FV KE+ E W
Sbjct: 68 DIDVEKSKYSVTGRYIFFVLYKKELQEEFW 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,105
Number of Sequences: 5004
Number of extensions: 27961
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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