Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N20
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 64 4e-11
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245... 52 1e-07
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 37 0.005
09_02_0621 - 11307417-11307813,11308078-11308246,11308372-113084... 30 0.59
05_07_0238 + 28597399-28598286 30 0.77
02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110 28 3.1
09_02_0625 + 11334418-11334499,11335067-11335164,11335758-113358... 27 4.1
02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939... 27 4.1
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 27 4.1
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 27 5.5
09_04_0436 - 17558603-17559265,17559322-17559384 27 7.2
06_01_0402 - 2882898-2883057,2883393-2883557,2883662-2883906 27 7.2
05_05_0355 - 24359265-24359888 26 9.5
04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059... 26 9.5
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 26 9.5
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 64.1 bits (149), Expect = 4e-11
Identities = 27/44 (61%), Positives = 36/44 (81%)
Frame = +3
Query: 9 QRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNET 140
+ ++L DR+ GGAS+ +G+I+LM+HRRLLHDD GV EALNET
Sbjct: 756 RELSILVDRSVGGASIKDGQIELMLHRRLLHDDGRGVAEALNET 799
>10_01_0232 +
2456449-2456652,2456814-2456897,2459113-2459201,
2459245-2459452,2459764-2459883,2460004-2460087,
2460171-2460242,2460342-2460455,2460852-2460952,
2461024-2461117,2461265-2461432,2461539-2461616,
2461908-2461973,2462052-2462108,2462353-2462572,
2462867-2463003,2465379-2465450,2465530-2465577,
2465681-2465806,2465982-2466047,2466508-2466620,
2467348-2467432,2467885-2467980,2468067-2468114,
2468190-2468258,2468393-2468581
Length = 935
Score = 52.4 bits (120), Expect = 1e-07
Identities = 23/46 (50%), Positives = 32/46 (69%)
Frame = +3
Query: 6 RQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETV 143
+ +VL D A G +S+ +G+I++M+HRRL DD GVGE LNE V
Sbjct: 747 KYELSVLVDHAVGASSIQDGQIEVMLHRRLSADDGRGVGEPLNEVV 792
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +3
Query: 12 RFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEAL 131
RF+V + ++ G ASL G +++M+ RRL DD G+G+ +
Sbjct: 938 RFSVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQGV 977
>09_02_0621 -
11307417-11307813,11308078-11308246,11308372-11308440,
11308635-11308761,11308985-11309253,11309356-11309522,
11309730-11309801,11310205-11310329
Length = 464
Score = 30.3 bits (65), Expect = 0.59
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 18 TVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGT-HVIIQAK 194
T ++ AAG ++ E R + D F G L ETV G+P + G HV+ + K
Sbjct: 317 THISVTAAGTIGYIDPEYYFS-SRLTMRSDVFSFGVVLLETVTGEPPIVPGVGHVVQRVK 375
Query: 195 NDIT 206
++
Sbjct: 376 QKVS 379
>05_07_0238 + 28597399-28598286
Length = 295
Score = 29.9 bits (64), Expect = 0.77
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = -3
Query: 145 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAARSVNTVN 14
STV+ + S +P++SS ++ CT+S +PS++ A P A + N
Sbjct: 33 STVTTSPS-SPSSSSTGSVDCTLSLGTPSSRRAEPVAAAAPAAN 75
>02_02_0066 - 6501250-6501273,6502018-6502102,6502926-6503110
Length = 97
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 127 ASPTPNASSWS---NLLCTISWISPSTKDAPPAARSVNTVNL 11
+ P P AS WS LC + WI+P +AP + + V++
Sbjct: 54 SQPPPPASRWSLISTFLCLLKWIAP--LEAPHQIQRIEQVDI 93
>09_02_0625 +
11334418-11334499,11335067-11335164,11335758-11335831,
11335996-11336598,11336692-11337185,11338035-11338170,
11338417-11338488,11338581-11338652,11339078-11339226,
11340129-11340364,11340567-11340693,11341011-11341079,
11341172-11341361,11341465-11341857,11342084-11342195
Length = 968
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +3
Query: 24 LTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQ-PLVAIGTHVIIQAKND 200
+T AAG ++ E L R + D F G L E V G+ P++ H++ + K
Sbjct: 787 ITATAAGTLGYIDPEYCLS-GRLTISSDVFSFGVVLLEIVTGEPPIIPTNGHIVQRIKEK 845
Query: 201 ITI 209
+ +
Sbjct: 846 VNM 848
>02_04_0620 -
24491055-24491710,24491794-24491986,24492165-24493991,
24494245-24494304,24494808-24494916,24496393-24496522,
24498740-24498848
Length = 1027
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 145 STVSFNASPTPNASSWSNLLCTISWISPSTKDAPPAAR 32
ST S NA +S+ + C++SW +++ A P R
Sbjct: 803 STTSKNAKAVSRSSAIEAVACSLSWDDTTSESALPGTR 840
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 121 PTPNASSWSNLLCTISWISPSTK 53
PT S W CT SW+S ++K
Sbjct: 478 PTMKTSDWYTKSCTYSWVSLNSK 500
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 148 PSTVSFNASPTPNASSWSNLLCTISWISPS 59
P+ ++ + SPT A++ S LL SW SP+
Sbjct: 71 PAVLALSPSPTAAAAALSALLSAPSWPSPT 100
>09_04_0436 - 17558603-17559265,17559322-17559384
Length = 241
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 148 PSTVSFNASPTPNASSWSNLLCTISW-ISPSTKDAPPAARSVNTV 17
PST S +A+P PNAS+ ++SW +P P++R+ V
Sbjct: 162 PSTTSSSATPPPNASATPT--PSLSWRTTPPPCQRHPSSRASRAV 204
>06_01_0402 - 2882898-2883057,2883393-2883557,2883662-2883906
Length = 189
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 273 ILENW*KMNNYQTFASKTLPDGLHLLTLEPRGD 371
+++ W KM + + S L DGLH L PRG+
Sbjct: 118 VIDIWSKMQRFPGWESSFLRDGLH---LTPRGN 147
>05_05_0355 - 24359265-24359888
Length = 207
Score = 26.2 bits (55), Expect = 9.5
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -3
Query: 253 TKTAGRLCSSNLVFSMVISFFA*IITCVPI---ATKG*PSTVSFNASPTPNAS 104
T T G C S V+ A VP+ A G PST SFN P P+ +
Sbjct: 47 TATDGLACRHRRRASAVVVTAAAAPPLVPVHAAAGHGVPSTKSFNEGPAPSTT 99
>04_04_1291 -
32404716-32404946,32405377-32405478,32405731-32405910,
32406023-32406100,32407501-32407620,32407713-32407805,
32408369-32408443,32408673-32408828,32408957-32409040,
32409773-32410450,32411814-32411877,32411968-32411978
Length = 623
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 81 VHRRLLHDDAFGVGEALNETVLGQPLVAIGTHVIIQAKNDITIEKTKLELHN 236
V ++H D EAL + G I + + QA+ E+T LH+
Sbjct: 564 VENLIIHGDLSAAAEALERGLQGSEAAEIASEWVKQARKRAIAEQTLTLLHS 615
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 24 LTDRAAGGASLVEGEIQLMVHRRLLH 101
+T R++GG S E EIQ MVH LH
Sbjct: 524 ITIRSSGGLS--EAEIQKMVHEAELH 547
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,366
Number of Sequences: 37544
Number of extensions: 187111
Number of successful extensions: 588
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -