Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N20
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    60   4e-10
Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical pr...    31   0.23 
Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical pr...    31   0.23 
Z92786-2|CAB07211.1|  518|Caenorhabditis elegans Hypothetical pr...    30   0.53 
Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    29   1.2  
Z83102-6|CAB05461.1|  417|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical ...    27   3.7  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 proteas...    26   8.7  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 proteas...    26   8.7  

>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical protein
            F55D10.1 protein.
          Length = 955

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
 Frame = +3

Query: 12   RFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVL-GQPLVAIGTHVIIQ 188
            +F+V+TDRA G  +  +G +++M+HRR  +DD FGV EAL+E    G  LVA+G H+++ 
Sbjct: 757  QFSVITDRAQGMVAS-DGVVEIMLHRRCFYDDHFGVEEALDEPGKDGAGLVAMGKHIVLF 815

Query: 189  AK-NDITIEKTKLELHNRPAVFVSDAKEIILENW*KMNNYQTFASKTLPDGLHLLTLEP- 362
                  T +   L + N     ++  K      + ++  Y     + LP G+HLLTLE  
Sbjct: 816  TDVKASTSQLRPLAIDNFHQPVLAFNKNPEKFEFNRLLEYSGLKFE-LPIGIHLLTLEKW 874

Query: 363  RGDDLLLRIEN 395
                 L+R EN
Sbjct: 875  HKKSSLIRFEN 885


>Z75954-6|CAJ55257.1| 1145|Caenorhabditis elegans Hypothetical protein
            F58H1.1b protein.
          Length = 1145

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 12   RFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNE 137
            R ++ + +A G +SL  G+I++M+ RRL  DD  G+ + + +
Sbjct: 935  RMSIHSAQALGVSSLSSGQIEIMLDRRLSSDDNRGLQQGVRD 976


>Z75954-5|CAB00104.1| 1143|Caenorhabditis elegans Hypothetical protein
            F58H1.1a protein.
          Length = 1143

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 12   RFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNE 137
            R ++ + +A G +SL  G+I++M+ RRL  DD  G+ + + +
Sbjct: 933  RMSIHSAQALGVSSLSSGQIEIMLDRRLSSDDNRGLQQGVRD 974


>Z92786-2|CAB07211.1|  518|Caenorhabditis elegans Hypothetical
           protein F47H4.4 protein.
          Length = 518

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 117 VGEALNETVLGQPLVAIGTHVIIQA---KNDITIEKTKLELHNRPAVFVSDAKEIILEN 284
           VGE +N+  L + L+       ++    K +I +EK  L+++N  +V   D KE+I +N
Sbjct: 233 VGEIMNKLKLEEKLLMRKVSKSLRGFMDKLNIGVEKISLKIYNTTSVLQFDEKEVIYQN 291


>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 145 STVSFNASPTPNASSWSN--LLCTISWISPSTKDAPPAARSVNTVN 14
           S+ S  ++ +P  SSWSN  LL   S + P T   PP  R+ +  N
Sbjct: 544 SSASNLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNTRNPSASN 589


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 145 STVSFNASPTPNASSWSN--LLCTISWISPSTKDAPPAARSVNTVN 14
           S+ S  ++ +P  SSWSN  LL   S + P T   PP  R+ +  N
Sbjct: 544 SSASNLSTASPATSSWSNTDLLGGFSPMKPQTTSTPPNTRNPSASN 589


>Z83102-6|CAB05461.1|  417|Caenorhabditis elegans Hypothetical
           protein C54C8.7 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +3

Query: 96  LHDDAFGVGEALNETVLGQPLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEII 275
           L DD  G   + N    G PLVA+G  V    +  +T +    E  ++   FV +     
Sbjct: 99  LWDDESGSARSYNNFSSGFPLVALGQCVYYSTQGALTGKWLSAECESQRMAFVCELPTTF 158

Query: 276 LENW*KMNNYQTF 314
            +N   ++NY  +
Sbjct: 159 ADNC--LHNYNGY 169


>AF016670-7|AAB66102.3|  361|Caenorhabditis elegans Hypothetical
           protein K02F6.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 165 IGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEIILENW*KMNNYQTFASK 323
           IG H+I+    D+  +K     HN   + VS  + I      K+N+Y+    K
Sbjct: 258 IGPHIIVTPSEDLLWKKCDFVFHNNRFLIVSPTELIEFLFEFKINHYKITGKK 310


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 117 VGEALNETVLGQPLVAIGTHVIIQAKND---ITIEKTKLELHNRPAVFVSDAKEI 272
           VGE +N+  L + LV       ++A  D   I +EK  L+++N  ++   D KE+
Sbjct: 202 VGEVMNKLGLKEKLVMRKVSKNLRAYMDNLNIGVEKISLKIYNTKSIVQFDEKEV 256


>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical protein
            F48C1.1 protein.
          Length = 1064

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/77 (19%), Positives = 34/77 (44%)
 Frame = +3

Query: 6    RQRFTVLTDRAAGGASLVEGEIQLMVHRRLLHDDAFGVGEALNETVLGQPLVAIGTHVII 185
            +QR +++++   G   L  G +++ + R L  DD  G+G   +   +    V +   +I 
Sbjct: 857  KQRLSIVSNVEHGARFLESGTVEINIDRILNQDDGKGLGTGPDAIPIDMKPVDMKFKLIF 916

Query: 186  QAKNDITIEKTKLELHN 236
             +      E ++   H+
Sbjct: 917  DSLESDPTENSRYSTHS 933


>U20861-8|AAA62297.3|  372|Caenorhabditis elegans Hypothetical
           protein C28H8.9a protein.
          Length = 372

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 277 KIISFASETKTAGRLCSSNLVFSMVISFFA*IITCVPIATKG*PSTVSFNASPTP--NAS 104
           K++S + E  T+   CS     +        +++C      G PS ++FN + T     S
Sbjct: 245 KLLSPSIEISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGHPSCLNFNQNVTKIIKRS 304

Query: 103 SWSNLLC 83
            W  L C
Sbjct: 305 GWQCLEC 311


>AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 protease
           suppressor 6 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 141 VLGQPLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEI 272
           V+G   VA+ TH    A  ++T  K +LE +  P   + D  EI
Sbjct: 225 VIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEI 268


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 188 LNNYMCSDSN*RLTEHGLVQ-RLSYSK-CVVVEQSPMHHQLDLAF 60
           LNN+ C  S+ R T+H  V  RLS  K C +     + H  D+ F
Sbjct: 338 LNNFYCVKSSIRRTKHTAVPVRLSNGKFCKLSSDVLLEHLRDMFF 382


>AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 protease
           suppressor protein 6 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 141 VLGQPLVAIGTHVIIQAKNDITIEKTKLELHNRPAVFVSDAKEI 272
           V+G   VA+ TH    A  ++T  K +LE +  P   + D  EI
Sbjct: 225 VIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEI 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,487,512
Number of Sequences: 27780
Number of extensions: 165196
Number of successful extensions: 419
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)