Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N19
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 38 4e-04
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 27 1.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 3.0
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 25 3.0
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.0
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 25 5.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.3
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr... 25 5.3
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 5.3
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.3
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 24 9.3
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 38.3 bits (85), Expect = 4e-04
Identities = 16/54 (29%), Positives = 33/54 (61%)
Frame = +2
Query: 128 ILCVDKELQRGFVERQISVVGDLLIIEFKGYDLKRLRVSLNSIFRSILLILKTI 289
+L D+EL+ V+R + V + L++ + + RV++NS+F ++ LI+ T+
Sbjct: 29 VLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNSLFENLYLIIDTM 82
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 165 TKPRCNSLSTHKISRTIKAESIDVYFRIRHYSEFQVS 55
T P + KI R ++A+SIDV+ YS+++ +
Sbjct: 182 TTPELTQIK-QKIRRILEAQSIDVFHPSTEYSDYETA 217
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 3.0
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -2
Query: 228 LRS*PLNSIMRRSPTTEI*RSTKPRCNSLSTHKISRTIKAESIDVYFRIRHYSEFQVSIN 49
L S +NS+MRR +TEI S P +S S + R++ + +Y + + + V
Sbjct: 2781 LNSGKVNSVMRRLVSTEI--SNTPNIDS-SFSTVYRSLNESIVPLYSELEFFMKSVVLNQ 2837
Query: 48 FI 43
+I
Sbjct: 2838 YI 2839
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 129 ISRTIKAESIDVYFRIRHYSEFQVSINF 46
++RT+K S+D R HYS F + + F
Sbjct: 91 MARTVKGNSLDEERRKDHYSHFILRLAF 118
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.0 bits (52), Expect = 4.0
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Frame = -2
Query: 378 VHKKSIQGPRWCGHWC-VFRH 319
+H+ + P CG WC +RH
Sbjct: 506 IHRLVVNAPDLCGEWCDWYRH 526
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 197 EDHQQQKSDVPQNLVVTPYPRIKYHEPLKPSRLTFTSA 84
+ H Q S+ L+ T Y + H P PSR+ F A
Sbjct: 409 KSHSQTGSEHSTPLLDTKYRKRLPHSPSMPSRVEFLPA 446
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 5.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -2
Query: 249 FKDTLSLLRS*PLNSIMRRSPTTEI*RSTKPRCNSLSTHKISRTIKAESIDVYFRIRHYS 70
F T+S S +++ S ++ S+ +SLS+HK S + K+ S V H S
Sbjct: 368 FSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNS 427
>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 311
Score = 24.6 bits (51), Expect = 5.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 241 YPQSLKVITFEFNNEKITN 185
YPQ + V++F+F ++ N
Sbjct: 197 YPQKITVVSFDFKRDRFLN 215
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 24.6 bits (51), Expect = 5.3
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Frame = -2
Query: 315 NSYLFSKRSIVFKISRMLLNIEFK---DTLSLLR-----S*PLNSIMRRSPTTEI*RSTK 160
N Y + ++ + +M+L EF+ D LSLLR S L + RR P RS
Sbjct: 162 NQYESREEHLLLSLFQMVLTTEFEATSDVLSLLRANTPVSRMLTTYTRRGPGQAYLRSIL 221
Query: 159 PRC-NSLSTH 133
+C N ++ H
Sbjct: 222 YQCINDVAIH 231
>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 24.6 bits (51), Expect = 5.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +2
Query: 209 FKGYDLKRLRVSLNSIFRSILL 274
F+G +LK L VS+N FR ILL
Sbjct: 283 FRGTELK-LSVSMNLAFRDILL 303
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 23.8 bits (49), Expect = 9.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 1 ARGKCSFPDLFS*RYKIY*NLKF*IMANAEVNVNRLGFNGS*YFMRG*GVTTRF 162
A G CS+P +FS + L +MA ++ N F RG G+ + F
Sbjct: 250 AGGPCSWPQIFSNEIRYRTLLGMGVMAFQQLTGNNYFFYYGTQVFRGTGLNSPF 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,579
Number of Sequences: 5004
Number of extensions: 29078
Number of successful extensions: 79
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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