Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N19
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1388 + 26649874-26649905,26650243-26650365,26650980-266510... 42 1e-04
02_02_0595 + 11968298-11968329,11969405-11969438,11970216-119703... 42 1e-04
03_05_0340 + 23294044-23294166,23294395-23294640,23294907-232949... 28 2.2
07_03_0446 - 18285132-18285221,18285437-18285499,18285805-182858... 27 3.8
10_08_0064 + 14592534-14592880,14593327-14593576 27 5.0
09_06_0251 - 21859484-21862162 27 5.0
08_02_1306 - 26015622-26015894,26016115-26016348 26 8.7
08_02_1254 + 25607827-25607865,25608066-25608770 26 8.7
08_02_0624 - 19434168-19435352 26 8.7
>08_02_1388 +
26649874-26649905,26650243-26650365,26650980-26651013,
26651792-26651893,26652174-26652241,26652518-26652571,
26653139-26653211,26653428-26653537,26653615-26653719,
26653842-26653941,26653979-26654088,26656234-26656306,
26656429-26656484,26656576-26656702
Length = 388
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +2
Query: 98 SIDSALMVRDILCVDKELQRGFVERQISVVGDLLIIEFKGYDLKRLRVSLNSIFRSILLI 277
S + A +V L VDKELQ V+R++SV G L++ F+ + + LR S ++ +L+
Sbjct: 312 SEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVDLTVLV 371
Query: 278 LKTID 292
K ++
Sbjct: 372 TKLVE 376
>02_02_0595 +
11968298-11968329,11969405-11969438,11970216-11970317,
11970598-11970665,11970942-11970995,11971563-11971635,
11971852-11971961,11972039-11972143,11972266-11972365,
11972403-11972512,11974664-11974736,11974859-11974914,
11975006-11975132
Length = 347
Score = 42.3 bits (95), Expect = 1e-04
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +2
Query: 98 SIDSALMVRDILCVDKELQRGFVERQISVVGDLLIIEFKGYDLKRLRVSLNSIFRSILLI 277
S + A +V L VDKELQ V+R++SV G L++ F+ + + LR S ++ +L+
Sbjct: 271 SEERASIVYKTLAVDKELQPDKVKREMSVSGGKLVVHFEAVEARFLRASFSAFVDLTVLV 330
Query: 278 LKTID 292
K ++
Sbjct: 331 TKLVE 335
>03_05_0340 +
23294044-23294166,23294395-23294640,23294907-23294945,
23295439-23295805,23295904-23296136,23296496-23296756
Length = 422
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +2
Query: 185 VGDLLIIEFKGYDLKRLRVSLNSIFR 262
VGD+ + EFK ++ RL +++++IFR
Sbjct: 393 VGDICLFEFKTHERWRLTMAVHAIFR 418
>07_03_0446 -
18285132-18285221,18285437-18285499,18285805-18285867,
18286079-18286129,18286413-18286506,18286696-18286856,
18287089-18287145,18287380-18287493,18287934-18287999,
18288063-18288266,18289207-18289284,18289669-18289788,
18290425-18290491,18290635-18290735,18290820-18290936,
18292024-18292107,18292181-18292309,18292385-18292510,
18292622-18292696,18292814-18292947,18293032-18293137,
18293220-18293276,18294387-18294573,18295244-18295407,
18296129-18296353,18296538-18296744,18297043-18297375,
18297604-18297993
Length = 1220
Score = 27.5 bits (58), Expect = 3.8
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -2
Query: 345 CGHWCVFRHFNSYLFSKRSIVFKISRMLLNIEFKDTLSLLR 223
C C HF YL KR+IV LLN E D S+L+
Sbjct: 864 CTIHCSLVHFKKYLLEKRAIVDADGGKLLN-EDNDIRSVLQ 903
>10_08_0064 + 14592534-14592880,14593327-14593576
Length = 198
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 275 ILKTIDLFENK*ELKCLNTHQCPHQRGPCMDFL 373
+ K ID+ L H+CP + CMDFL
Sbjct: 130 LCKRIDVSSAATTLALAEQHRCPSLKKACMDFL 162
>09_06_0251 - 21859484-21862162
Length = 892
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 197 EDHQQQKSDVPQNLVVTPYPRIKYHEPLKPSRLTF 93
ED ++ +D LVVT P ++Y P P ++ +
Sbjct: 366 EDQERIIADAKTPLVVTSAPAVRYPNPPNPDKVIY 400
>08_02_1306 - 26015622-26015894,26016115-26016348
Length = 168
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 314 LKCLNTHQCPHQRGPCMDF 370
L C T+ CP + C+DF
Sbjct: 113 LACAETYDCPELKNKCIDF 131
>08_02_1254 + 25607827-25607865,25608066-25608770
Length = 247
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 314 LKCLNTHQCPHQRGPCMDF 370
L C H CP + C+DF
Sbjct: 193 LACAEMHSCPELKSRCLDF 211
>08_02_0624 - 19434168-19435352
Length = 394
Score = 26.2 bits (55), Expect = 8.7
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +2
Query: 218 YDLKRLRVSLNSIFRSILLILKTIDLFENK*ELKCLNTHQCPHQRGPCMDFLCTS 382
+DL+R+R+ + +TID+ L+ + H CP + CM+++ ++
Sbjct: 307 FDLERMRLLCEDA------LWETIDVANAAATLRLADRHHCPQLKELCMEYIASA 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,188,557
Number of Sequences: 37544
Number of extensions: 152890
Number of successful extensions: 396
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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