Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N19
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   2.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.7  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 274 NFKNY*SF*K*IRVEMPEHTPVPTPARSLYGFF 372
           N+ NY +      +   E  PVP P    YG F
Sbjct: 317 NYNNYNNKKLYYNINYIEQIPVPVPVPIYYGNF 349


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -2

Query: 189 PTTEI*RSTKPRCNSLSTHKISRTIKAESIDVYFR 85
           P T++      R  +   +    T+K  ++D+YFR
Sbjct: 667 PKTKLTGINDARLRNTMENLTCATVKGSAVDMYFR 701


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -2

Query: 210 NSIMRRSPTTEI*RSTKPRCNSLST---HKISRTIKAESIDVY 91
           NSI   S  ++   +T    +S +    HK+   IK+E ID Y
Sbjct: 222 NSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAY 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
 Frame = +2

Query: 221 DLKRLRVS---LNSIFRSI--LLILKTIDLFENK 307
           DLK L +S   L S+  ++  L +LKT+DL EN+
Sbjct: 432 DLKELDLSGNELTSVPDALRDLALLKTLDLGENR 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,544
Number of Sequences: 438
Number of extensions: 2252
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)