Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N18
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 123 3e-30
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 123 3e-30
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 123 3e-30
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 71 2e-14
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 66 4e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 35 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 34 0.002
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 34 0.002
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 30 0.047
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 29 0.062
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.11
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 0.58
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 0.58
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 0.77
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 1.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 1.8
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 2.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 3.1
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy... 24 3.1
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 24 3.1
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 3.1
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 23 4.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 23 4.1
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 23 5.4
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 5.4
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 23 5.4
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 23 7.2
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 23 7.2
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 23 7.2
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 23 7.2
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 23 7.2
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 23 7.2
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 23 7.2
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 23 7.2
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 22 9.5
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 22 9.5
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 22 9.5
SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces... 22 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 123 bits (297), Expect = 3e-30
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 123 bits (297), Expect = 3e-30
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 123 bits (297), Expect = 3e-30
Identities = 55/60 (91%), Positives = 58/60 (96%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 70.9 bits (166), Expect = 2e-14
Identities = 30/56 (53%), Positives = 43/56 (76%)
Frame = +3
Query: 63 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
K H+NIV IGHVD+GKST G++++ G +D+RT+EK E+EA+E GK S+ +W L
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWAL 291
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 66.5 bits (155), Expect = 4e-13
Identities = 27/53 (50%), Positives = 39/53 (73%)
Frame = +3
Query: 72 INIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKYAWVL 230
+++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+L
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLL 230
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 34.7 bits (76), Expect = 0.002
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHLIYKC 143
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 146
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.3 bits (75), Expect = 0.002
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 51 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCG 146
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 29.9 bits (64), Expect = 0.047
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 63 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKY 218
KV+ +++I ++D G L G ID+ T + +K+A+ G+ +F+Y
Sbjct: 591 KVNAQVMLIKNIDD--QLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEY 640
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.5 bits (63), Expect = 0.062
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDE 158
NI + H+DSGK+T T ++Y G I +
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKD 88
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.11
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCG 146
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 0.58
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 142 AVVSTNVPSKSSRRKPRKWVRVPS 213
A++S + K + +P KWV VPS
Sbjct: 224 ALISNGLKVKETSEEPEKWVVVPS 247
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 0.58
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDE 158
N VI H+D GKST + ++ G I+E
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 99 DSGKSTTTGHLIYKCGGIDE 158
+S K TT GH++ +C IDE
Sbjct: 1881 NSVKFTTEGHILLRCMAIDE 1900
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 45 PKMGKEKVHINIVVIGHVDSGKST 116
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 81 VVIGHVDSGKSTTTGHLIYKCGGIDERTI 167
+V+GH GK+T +Y+ G + I
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAGWASQNGI 73
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 78 IVVIGHVDSGKSTTTGHLIYKC 143
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 78 IVVIGHVDSGKSTTTGHLIYKCG 146
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 357
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 134 LQMRWYRRTYHRKVREGSPGNG*GFLQIRLGIG 232
+ M W R+ HR +P G L + G+G
Sbjct: 165 VMMSWERKIMHRSAEIIAPTKGRRVLNVGFGLG 197
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 23.8 bits (49), Expect = 3.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 87 IGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKY 218
I HV G+ L + GG RTIE E E + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDER 161
N ++ HVD GK+T L+ G I +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSK 49
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHL-IYKCGGIDERTIEKF 176
K+K ++++G DSGKST + + I G + I F
Sbjct: 30 KDKKIYKVLLLGASDSGKSTISKQIKILNKNGFSQEEIMTF 70
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKSTTTGHLI 134
++ + N++V+G SGKST L+
Sbjct: 91 RQGFNFNVLVLGESGSGKSTLVNTLL 116
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 223 QAYLKEPLPISWASFSNFSMVRSSIP 146
++YL+ PL S S S + +R+SIP
Sbjct: 339 RSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGI-DERTIEKFEKEAQEMGKG 206
++ V+G +SGKST L + G+ +E ++ F + KG
Sbjct: 211 HVYVVGEANSGKSTLLKTLAKRGNGVFNELLLDSFLPGTTQAIKG 255
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Frame = -3
Query: 221 SVFEGTLTHFLGFLLELFDGTFVDTTAFVDQVTSCCGLA 105
+ F+G L FLG+ ++L T ++ LA
Sbjct: 365 TAFKGMLARFLGYTMQLAPYTVETILPYIQSSAEAAALA 403
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/48 (25%), Positives = 19/48 (39%)
Frame = +3
Query: 75 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKEAQEMGKGSFKY 218
++ G G H Y G IDE T ++ + K S++Y
Sbjct: 1599 SVTAFGFGQVGGQVIVIHPDYIYGVIDEATYNAYKAKTAARYKASYRY 1646
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 136 TNAVVSTNVPSKSSRRKPRKWVRVPSNTLGYW 231
T V+S K + R V VPS+TLG W
Sbjct: 446 TCQVISFLASLKEKGIQNRHLVVVPSSTLGNW 477
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 57 KEKVHINIVVIGHVDSGKST 116
KEK I+V+G SGK+T
Sbjct: 4 KEKKPCAIIVVGMAGSGKTT 23
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 60 EKVHINIVVIGHVDSGKST 116
+K+H ++ GH DS ST
Sbjct: 88 KKIHTTVLASGHEDSDYST 106
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 78 IVVIGHVDSGKSTTTGHLIYK 140
+ +IG DSGK++ LIYK
Sbjct: 40 VFLIGPSDSGKTSLFCELIYK 60
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = +1
Query: 154 TNVPSKSSRRKPRKWVRVPSNTL 222
T++ +++ KW+R+PS T+
Sbjct: 893 TSIEDRTADDSTDKWLRLPSGTI 915
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 115 QQLVT*STNAVVSTNVPSKSSRRKPRKWVRVP 210
++L T AV++ + +K RR+P+ RVP
Sbjct: 1257 KELSTAPPGAVMARRLMTKDPRREPQYGERVP 1288
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 163 PSKSSRRKPRKWVR 204
PS R +PR+WVR
Sbjct: 216 PSDRVREEPREWVR 229
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 27 IVIRD*PKMGKEKVHIN 77
I+ + P GKE VHIN
Sbjct: 10 IICLEIPLQGKENVHIN 26
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 159 RTIEKFEKEAQEMGKGSF 212
RT+E+ EKEAQ + KG F
Sbjct: 159 RTLEEMEKEAQWL-KGYF 175
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +3
Query: 78 IVVIGHVDSGKST 116
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPBC3E7.02c |hsp16||heat shock protein Hsp16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/55 (16%), Positives = 25/55 (45%)
Frame = +1
Query: 43 NQKWAKKRFXXXXXXXXXXXPASPQQLVT*STNAVVSTNVPSKSSRRKPRKWVRV 207
NQ+W+++RF ++ +N +++ +P K + + +K + +
Sbjct: 89 NQRWSERRFGSFSRTITIPAKIDADRIEANFSNGLLTVTLP-KVEKSQTKKQIAI 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 982,290
Number of Sequences: 5004
Number of extensions: 15657
Number of successful extensions: 80
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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