Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N16
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    27   0.50 
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   0.86 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    25   2.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   3.5  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    24   4.6  

>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -1

Query: 285 EPSTVPFDHLPYDCSATE--YLKLFDT-FPILSVELFTNXA--FLCNSFFGSCKVIGTYY 121
           +PS     HL      TE   LK+ D+  P+  VE F      ++C   FG   VIG Y 
Sbjct: 273 QPSFSNLSHLDASDIVTEDTKLKVIDSPKPVFWVEAFNKAMQKWVCVDPFGDASVIGKYR 332

Query: 120 NFQ 112
            F+
Sbjct: 333 RFE 335


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 191 STERIGNVSKSFRYSVAEQSYGRWS 265
           S E IG+ S+   YSV EQ  G W+
Sbjct: 24  SNELIGSASRDGTYSVWEQINGEWT 48


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 74  IYQCCKKLSIFISDNSI 24
           IY CC  L++FI+ N++
Sbjct: 169 IYACCMALTVFINPNAL 185


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 285  EPSTVPFDHLPYDCSATEYLKL 220
            EP  VP D+LP   +   YLKL
Sbjct: 1599 EPPYVPDDYLPSVMTCVNYLKL 1620


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 43  NIDNFLQH*YIYSNGKSYYIFLV 111
           N+D+FLQ  Y Y  GK     +V
Sbjct: 182 NLDSFLQQVYTYYTGKGLSCIIV 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,297
Number of Sequences: 5004
Number of extensions: 21540
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)