Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N16
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 28 1.3
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 28 1.3
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 28 1.3
07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237 27 4.1
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 26 5.4
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 26 7.2
09_06_0120 - 20973635-20974879 26 7.2
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 26 7.2
02_05_0355 + 28249774-28249980,28250068-28250131,28250230-282502... 25 9.5
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 285 EPSTVPFDHL--PYDCSATEYLKLFDTFPIL 199
+P +P L PY+CS EY +L+ + P +
Sbjct: 903 QPYKIPLAELLLPYECSPVEYFRLWPSLPAM 933
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 198 KELETYQRALDIQ-WLNSRMEDGRMGRCLALIQK 296
KELE+ + L++ WL+ R+ED R LA QK
Sbjct: 564 KELESIHKVLELYVWLSFRLEDSYPDRELAASQK 597
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 285 EPSTVPFDHL--PYDCSATEYLKLFDTFPIL 199
+P +P L PY+CS EY +L+ + P +
Sbjct: 904 QPYKIPLAELLLPYECSPVEYFRLWPSLPAM 934
>07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237
Length = 194
Score = 26.6 bits (56), Expect = 4.1
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = -1
Query: 282 PSTVPFDHLPYDCSATEYLKLFDTFPILSVELFTNXAFLCNSFFGSCKVIGTYYNFQ-N* 106
P+ H P+ C TE ++ SVE A L S S K + + N Q N
Sbjct: 57 PNLQGLQHPPFICKGTERMQWAGQKRFFSVEAKAKDAKLMESARSSVKRLMAWMNEQANP 116
Query: 105 KNVIRLTITINISML*KIINIYIRQ 31
+N + IN+ L I+IR+
Sbjct: 117 RNTAIVLTIINVVYL----GIFIRE 137
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +1
Query: 22 FIELSDINIDNFLQH*YIYSNGKSYYIFLVLK 117
F+EL+ +N+D + + Y S + ++I+ ++K
Sbjct: 1257 FLELNKVNLDGYNEVKYTPSRDRQWHIYTLIK 1288
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +1
Query: 10 IRPGFIELSDINIDNFLQH*YIYSNGKSYYIFLVLKVIISSNDFTGAEK*IAKKCXISEK 189
+RP F++ +NI Q ++ GKS L I N +K + K S K
Sbjct: 100 VRPMFVKHQMVNIWYVPQKKGLF--GKSDDFLTALDKFIEENGPEALKK-LTNKAGKSSK 156
Query: 190 LDGKNWKRIK 219
GK+WK K
Sbjct: 157 QSGKSWKDSK 166
>09_06_0120 - 20973635-20974879
Length = 414
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 306 SLPLFV*EPSTVPFDHLPYDCSAT-EYLKLFDTFPILSVELFTNXAFL 166
SLP F+ PS+ P LP S+T E L L +T L +LF A L
Sbjct: 102 SLPTFLPSPSSAPPPPLPAPISSTKEALSLLNT---LQTQLFEAVAEL 146
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 146 EPKNELQRNAXLVKSSTERIGNVSKSFRYSVAEQSYG 256
EP + QR L + S + ++K+F + + + +YG
Sbjct: 373 EPSQKKQRAQHLKRYSYSEVERMTKTFAHKIGQGNYG 409
>02_05_0355 +
28249774-28249980,28250068-28250131,28250230-28250273,
28250377-28250624,28250712-28250883
Length = 244
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 70 YIYSNGKSYYIFLVLKVIISSNDFTGA 150
+I+ NG+S+Y +L + +S+ GA
Sbjct: 95 FIFGNGRSFYEKCILNSVATSDGINGA 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,206,973
Number of Sequences: 37544
Number of extensions: 115414
Number of successful extensions: 285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -