Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N16
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical...    28   1.2  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    27   3.6  
AF024503-2|AAG24099.1|  331|Caenorhabditis elegans Serpentine re...    26   4.8  
AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    26   4.8  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical
           protein Y45F10D.13a protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 114 QN*KNVIRLTITINISML*KIINIYIRQLDKAWPNSCS 1
           QN  ++IR  IT N+    K +N+Y++Q+D  W  S S
Sbjct: 32  QNSLDLIR--ITNNLDETTKSLNLYLQQIDATWKRSKS 67


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 219 FDTFPILSVELFTNXAFLCNSFFGSCKVIGTYYNFQN*KNVIRLTITINISM 64
           F  F   S E+FT   F+C +F    + I T     N K  I + + I +S+
Sbjct: 202 FFIFSTTSTEVFTFVCFICMTFSQQNRRITTSSRTLNLKKAIFIALIIQMSV 253


>AF024503-2|AAG24099.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein5 protein.
          Length = 331

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 10  IRPGFIELSDINIDNFLQH*YIYSNGKSYYIFLVLKVIISSNDFT 144
           IRP F+E+  +N DN       Y N   + ++  L  I+S   F+
Sbjct: 162 IRPAFLEIHHVNSDNISLLTGQYRNASDFVVYKSLFGIMSLTLFS 206


>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 239 AEQSYGRWSNGTVLGS 286
           AE+ YG W  G++LGS
Sbjct: 394 AERKYGAWIGGSILGS 409


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 207  ETYQRALDIQWLNSRMEDGRMGRCLALIQK 296
            E  + + +IQW      DG+ GRC   I+K
Sbjct: 1411 EPVKPSREIQWYTQDAPDGKRGRCGKDIEK 1440


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,636,320
Number of Sequences: 27780
Number of extensions: 114561
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)