Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N16
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   0.65 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   0.65 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   1.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   3.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   4.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   4.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   6.0  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   8.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 215 SKSFRYS-VAEQSYGR-WSNGTVLGSYTKRGRDG 310
           SKS  Y  + E++Y +  SNGT+L  + K  R+G
Sbjct: 749 SKSGEYEELRERAYTKILSNGTLLLQHVKEDREG 782



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 213 TFPILSVELFTNXAFLC 163
           T P+LSV L  N  F C
Sbjct: 336 TPPLLSVHLGGNAEFRC 352


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 0.65
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 215 SKSFRYS-VAEQSYGR-WSNGTVLGSYTKRGRDG 310
           SKS  Y  + E++Y +  SNGT+L  + K  R+G
Sbjct: 745 SKSGEYEELRERAYTKILSNGTLLLQHVKEDREG 778



 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 213 TFPILSVELFTNXAFLC 163
           T P+LSV L  N  F C
Sbjct: 336 TPPLLSVHLGGNAEFRC 352


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 250 VWKMVEWDGAWLL 288
           +++ VEW G W+L
Sbjct: 54  LYERVEWSGPWIL 66


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 126 YYNFQN*KNVIRLTITINISML 61
           Y + Q+ +  +R T+T+N+S+L
Sbjct: 123 YTSHQHLRTHLRGTLTVNVSVL 144


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 88  YHYYKYINVV 59
           Y+ YKY+NV+
Sbjct: 320 YYKYKYLNVI 329


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 88  YHYYKYINVV 59
           Y+ YKY+NV+
Sbjct: 320 YYKYKYLNVI 329


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 73  IYSNGKSYYIFLVLKVIISSNDF 141
           IYS+  S+YI  ++ V +  N F
Sbjct: 345 IYSSLSSFYIPCIIMVFLYYNIF 367


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 168 LCNSFFGSCKVIGTYYNFQN*KNV 97
           + +S   SC     YYN  N K +
Sbjct: 303 IISSLSNSCNYSNNYYNNNNYKKL 326


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = +1

Query: 253 WKMVEWDGAWLLYKKRQRW 309
           W  V W  AW   ++R+++
Sbjct: 164 WLSVFWGSAWQWNEERKQY 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,658
Number of Sequences: 438
Number of extensions: 1392
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)