Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N15
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    37   4e-04
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   1.8  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    24   3.1  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   5.4  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    23   7.1  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    22   9.4  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    22   9.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    22   9.4  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 36.7 bits (81), Expect = 4e-04
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 99  LFEKRTKNFAIGQDIQPTRDLSR 167
           LF  R ++F IGQDIQP RDLSR
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSR 48


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 83  EDCKPSIREENKELCY 130
           E CK  + + NKELCY
Sbjct: 947 EACKACLLQGNKELCY 962


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 92  YNLLGLNFLHHKW 54
           YN  GL++L H+W
Sbjct: 881 YNAAGLSYLRHEW 893


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 140 VLANSKVLCSLLE*RVYNLLGLNFLH 63
           V    K L S ++ + Y L+G+N+LH
Sbjct: 537 VTEQPKTLASDVQLKSYQLVGVNWLH 562


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 102 FEKRTKNFAIGQDIQPTRDL 161
           FE+R + FA    IQP  D+
Sbjct: 181 FERRNRMFASSARIQPNEDV 200


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 117 LFSSRIEGLQSSWAQLSS 64
           +FSSR  G+QS ++ LSS
Sbjct: 472 IFSSRDLGVQSEFSNLSS 489


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 128 YWPGHPANQRSIP 166
           +WP   A+Q+SIP
Sbjct: 76  WWPARVASQKSIP 88


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 158 ISGWLDVLANSKVLCSL 108
           +  ++D L N KVLC L
Sbjct: 85  LDDFVDALVNGKVLCQL 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 521,756
Number of Sequences: 5004
Number of extensions: 5932
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)