Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N14
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0102 + 8414109-8414505,8416172-8416227 33 0.089
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325... 31 0.47
11_08_0086 + 28268227-28270008 29 1.1
09_06_0097 + 20845417-20845518,20845728-20846581,20846666-208467... 29 1.1
12_02_0817 - 23424341-23424440,23424552-23424635,23424926-23424981 29 1.9
05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189 29 1.9
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 29 1.9
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 29 1.9
05_01_0488 - 4070506-4072277,4072455-4072557 28 2.5
02_05_0109 - 25909126-25909308,25909454-25909660,25910130-259103... 28 2.5
06_03_0615 - 22761375-22761760,22762218-22765026 27 5.8
06_01_0768 + 5742938-5743196,5743291-5744729 27 5.8
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572... 27 5.8
10_01_0097 - 1171949-1172047,1172520-1172591,1172791-1172949,117... 27 7.7
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 27 7.7
01_06_1501 + 37804029-37804600,37804626-37805388 27 7.7
>05_03_0102 + 8414109-8414505,8416172-8416227
Length = 150
Score = 33.1 bits (72), Expect = 0.089
Identities = 21/89 (23%), Positives = 43/89 (48%)
Frame = +1
Query: 145 QDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDAN 324
+D+E+ + + Q+NA+ + L + + D++ + ELS + + D
Sbjct: 8 EDVEEDGNNNEPITRLQYNAL-----RDVLRREMNSRMDTLEGRTDELSQKFEKTIQDFE 62
Query: 325 GKAKEVLQQARQNLERTVEDLRKAHPDVE 411
+ ++Q RQN+ + +E L + PDVE
Sbjct: 63 VQVNNNMEQLRQNIVQDLEHLLR--PDVE 89
>12_02_0797 -
23230441-23230757,23230922-23231069,23231352-23232562,
23232639-23232894,23234073-23234309
Length = 722
Score = 30.7 bits (66), Expect = 0.47
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +1
Query: 148 DLEKHAQDFQKTISEQFNAIVNSK-NTESLNKALKEGSDSMVQQVSELSNSLQGALTDAN 324
DL+ Q FQ ++SE+ + ++K ++S N + + +++ + S SLQ
Sbjct: 106 DLQAAIQRFQPSLSEKPPSKRSNKLRSDSSNSGSQHAASLVLEAIYLKSMSLQKL----- 160
Query: 325 GKAKEVLQQARQNLERTVEDLRKAHPDV 408
GKA E QQ R L+ ++ PDV
Sbjct: 161 GKAVEAAQQCRSVLDAVESIFQRGIPDV 188
>11_08_0086 + 28268227-28270008
Length = 593
Score = 29.5 bits (63), Expect = 1.1
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 139 ILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVS-ELSNSLQGALT 315
+L +L HA + E+ ++++ + +NK K+GS S V + L Q T
Sbjct: 167 LLDELMLHAHETCIKDMEKLRIDMDNEAEKKINKKDKKGSSSKVVDLRLLLIQCAQATAT 226
Query: 316 DANGKAKEVLQQARQNLERTVEDL-RKAH 399
D A E+L++ +Q+ T + + R AH
Sbjct: 227 DNQQSAGELLKKIKQHALATGDAMQRVAH 255
>09_06_0097 +
20845417-20845518,20845728-20846581,20846666-20846726,
20847320-20847358,20847602-20847682
Length = 378
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +1
Query: 232 LNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLRK 393
L LKE + +++Q +L SLQ L +A+ K + + +E+ E+L K
Sbjct: 25 LEAVLKEEEEDLLKQEEQLKQSLQ-ELFEAHATVKARIDKVHTQVEKDEEELEK 77
>12_02_0817 - 23424341-23424440,23424552-23424635,23424926-23424981
Length = 79
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = -2
Query: 204 CVKLFTDRXXXXXXXXXXXXQYSIRGVTPD--HRSVSEGNAGEQHEALAAMRCRSRCEFE 31
C K++ D ++ GV P+ H V G AGE EA C S C
Sbjct: 18 CGKMYPDLAEKINTTITTAT--TVLGVAPEKGHFEVMVGKAGESGEAAHGCSCGSSC--- 72
Query: 30 AKCQVSSC 7
KC +C
Sbjct: 73 -KCNPCNC 79
>05_06_0198 + 26300872-26301519,26302939-26303028,26303118-26303189
Length = 269
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 10 RGDLALRFELAPTPTPHGRKCFVLFACVALAHG 108
R DL + F P+ H C L A VAL HG
Sbjct: 152 RWDLRMLFSSGGMPSSHTALCTALTASVALCHG 184
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 58 HGRKCFVLFACVALAHGAMVRRDAPNTILQ-DLEKHAQDFQKTISEQFNAIVNSKNTESL 234
HG F+ + G + R A + +L D + +A Q+ + + + NSK L
Sbjct: 575 HGDPLFLRHVAIVEIWGLLALRLADDPVLPFDYQTYASQLQEHANAFSSMMENSKWVHLL 634
Query: 235 NKALKEGSDSMVQQVSE 285
N+++++ SD+ ++ + E
Sbjct: 635 NRSIEDLSDAGLEFLKE 651
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 405 VGVRLAEILDCALQVLASLLEHFLSFTVCVGQ 310
+GV +A + D L +L S+L T CVGQ
Sbjct: 135 LGVGIASVTDLKLNLLGSVLSGLAIATTCVGQ 166
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 28.3 bits (60), Expect = 2.5
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Frame = +1
Query: 127 APNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSEL------ 288
+P++ +DL++ QK S+ F+ + S + ++K +GS S + EL
Sbjct: 110 SPSSPERDLQEKMSQKQKPRSDCFDVSIGSGMSSDVSKKGSDGSSSSSESDLELDEAKEE 169
Query: 289 -SNSLQGALTDANGKAKEVLQQARQNLERTVEDLRKAH 399
NS+ AL+ + ++ L + R L+ + E + H
Sbjct: 170 NGNSIFYALSQKIIELEDELHEVRGKLDASEEKNMRCH 207
>02_05_0109 -
25909126-25909308,25909454-25909660,25910130-25910336,
25910411-25910459,25911005-25911204,25911275-25911360,
25911441-25911597,25911808-25911972,25913254-25913490
Length = 496
Score = 28.3 bits (60), Expect = 2.5
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +1
Query: 205 IVNSKNTESLNKALKEGSDSMV-QQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVE 381
+++ K+ E L KAL+E SD+++ +++ + S L G L G VLQ R + + V+
Sbjct: 370 LLHDKSEEKL-KALREISDTVMHRKLLDSSVDLVGKLLFGFGNGPSVLQAVRPSGQPLVD 428
Query: 382 D 384
D
Sbjct: 429 D 429
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 27.1 bits (57), Expect = 5.8
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +1
Query: 106 GAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTE-SLNKALKE-----GSDSM 267
GA+ A T+L+ L+ H F I QF ++N + + S+NK E G+ S
Sbjct: 494 GALPGELANITVLELLDVHNNSFTGAIPPQFGELMNLEQLDLSMNKLTGEIPASFGNFSY 553
Query: 268 VQQVSELSNSLQGAL 312
+ ++ N L G L
Sbjct: 554 LNKLILSGNMLSGTL 568
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 272 SRSPSYPTVYRVR*PTQTVKLRKCSNKLARTWSAQSRISARRTPTS 409
+RSP V R+R Q R+C A W A R+ +RR T+
Sbjct: 121 ARSPCRHLVKRLR--EQEALQRRCGPGTAAYWRAAERLGSRRNGTA 164
>04_04_0201 -
23555336-23556008,23556097-23556258,23556353-23557206,
23557452-23557613,23558197-23558649,23559729-23559788,
23559983-23560058,23561546-23561593,23561948-23562022,
23562067-23562494
Length = 996
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 336 GSAPTSSPELGAHSRGSPQGAPRRR 410
GSA +SSP +RGS G+P RR
Sbjct: 27 GSAASSSPRWLPRARGSTVGSPPRR 51
>10_01_0097 -
1171949-1172047,1172520-1172591,1172791-1172949,
1172998-1173381,1173478-1175253,1175329-1175452,
1176859-1177027,1177131-1177226,1177339-1177527,
1177965-1179303
Length = 1468
Score = 26.6 bits (56), Expect = 7.7
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +1
Query: 244 LKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDL 387
LK+ + +QVS N+ + T A G EVLQ QNL RT+ L
Sbjct: 745 LKKLAPESYKQVS--GNTSNSSETVAAGSIDEVLQSMDQNLFRTLPKL 790
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 133 NTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGAL 312
+ +L LE+ S+ I N N+ + + +++SE+ S +GAL
Sbjct: 385 DNLLNQLEEKLSAALSDTSKNKIIIAELNNELDTNRTMLDNEAEAHKKLSEILQSTEGAL 444
Query: 313 TDANGK 330
TD K
Sbjct: 445 TDYRDK 450
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +3
Query: 207 RQLKEHGEL-EQSTEGRLRLHGAAGLRVIQQSTGCVD 314
R L HG++ ++T R R H A RV+ CVD
Sbjct: 129 RLLARHGDVPRRATRPRRRRHPRAARRVVLLGCACVD 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.127 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,110
Number of Sequences: 37544
Number of extensions: 208752
Number of successful extensions: 572
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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