Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N13
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 33 0.15
01_01_0165 - 1410137-1410924,1411774-1411933 31 0.34
10_05_0004 + 7717748-7717798,7718107-7718317,7719424-7720079,772... 30 0.78
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 30 0.78
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 29 1.8
05_03_0458 + 14280953-14281866,14281964-14282912 29 1.8
07_03_0084 - 13234531-13234631,13234713-13234789,13235492-132355... 28 3.1
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649... 27 5.5
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669... 27 5.5
06_03_0538 + 21913175-21914218 27 7.3
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967... 27 7.3
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 425 PESCTGCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSAFR 285
P + G PR SPS P + PKC G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>01_01_0165 - 1410137-1410924,1411774-1411933
Length = 315
Score = 31.5 bits (68), Expect = 0.34
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 440 MRIGEPESCTGCPRTSPSVPSIAMVRTVFSP 348
+R+G P C G P +SPS +IA R V P
Sbjct: 14 LRLGLPARCLGDPSSSPSALAIARCRNVAGP 44
>10_05_0004 +
7717748-7717798,7718107-7718317,7719424-7720079,
7721296-7721469,7721562-7721678,7722820-7722999,
7723244-7723290,7724068-7724401
Length = 589
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -1
Query: 398 TSPSVPSIAMVRTVFSPKCCATSSTSRG 315
TS S P+++ VR +P C ATSS S G
Sbjct: 50 TSTSPPTVSSVRQEIAPCCIATSSASDG 77
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 30.3 bits (65), Expect = 0.78
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 271 NLPPILNALEVQNRSPRL-VLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGS 429
NLPP+L ++ +N + +L+ GEN +R T + + +H++ S
Sbjct: 2825 NLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAFWSHTPCTLESKDLHEACS 2878
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 395 SPSVPSIAMVRTVFSPKCCATS 330
+P+ PS A VR SP+CC+ S
Sbjct: 2 APTAPSPASVRAAASPRCCSRS 23
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 425 PESCTGCPRTSPSVPSIAMVRTVFSPKCCATSSTSRGERFCTSSA 291
P S T P S S+P + R+ S KC A +S RF +SS+
Sbjct: 94 PPSPTTSPSAS-SLPPVPTPRSASSSKCSAPTSAQTPTRFLSSSS 137
>07_03_0084 -
13234531-13234631,13234713-13234789,13235492-13235577,
13235598-13235661,13236278-13236357,13236647-13236716,
13237416-13237618,13237725-13237814,13239416-13239667
Length = 340
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 451 LLQECGSANQSHVRVVRALAPRYRP*QWFGP 359
L CG ++ S V+V + +RP W GP
Sbjct: 14 LCDSCGESSLSAVKVTPRASSSFRPVSWMGP 44
>06_03_0577 +
22461831-22462023,22462378-22463160,22463380-22464936,
22465082-22465449
Length = 966
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 208 LKFWLHNHVCSQELQKLLVIFQK 140
L+ WLH H+ Q Q +L I+QK
Sbjct: 745 LEKWLHTHIDEQSDQSVLNIYQK 767
>02_05_0561 -
29965968-29966326,29966375-29966414,29966877-29966951,
29967003-29967107,29967453-29967592,29967691-29967775
Length = 267
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 37 FSYKLLNIRSKYTTKMFSTVCRAGRLATKAVANNTSEKLPIISGA 171
FSY +N+ KY +F+ CR G+L S+K ++S A
Sbjct: 203 FSY--INLYGKYPPGLFANECREGKLGLS--CEGVSQKDSVVSSA 243
>06_03_0538 + 21913175-21914218
Length = 347
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 286 LNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVHDSGSP 432
L E + SP + A+HL + ++ D TE V+ V D G P
Sbjct: 233 LERFECGSWSPPPPMAPAEHLAQEVAKSSCADDTEAPVKMAFVFDHGEP 281
>03_05_0813 -
27894593-27894915,27896164-27896422,27896513-27896728,
27896920-27897625,27897895-27898100
Length = 569
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = -2
Query: 268 LRTVRQPQHR*L-QPPYLGLC---LKFWLHNHVCSQELQKLLVIF 146
LR +QP+ + L Y+ LC KFWLH+ + + ++ L F
Sbjct: 328 LRHQQQPEPKRLCNDAYIALCHRRFKFWLHHDLVCKNVEVALATF 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,557
Number of Sequences: 37544
Number of extensions: 255152
Number of successful extensions: 629
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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