Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N11
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   140   4e-34
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   137   3e-33
04_04_0157 + 23165638-23166633                                         28   2.4  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    26   9.6  
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409...    26   9.6  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  140 bits (339), Expect = 4e-34
 Identities = 66/121 (54%), Positives = 81/121 (66%)
 Frame = +2

Query: 35  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 214
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 215 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFRE 394
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F E
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122

Query: 395 P 397
           P
Sbjct: 123 P 123


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  137 bits (332), Expect = 3e-33
 Identities = 67/119 (56%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
 Frame = +2

Query: 47  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 220
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 221 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREP 397
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EP
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEP 123


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 210 FSHVRRRLITCVPSPRRL 157
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 348 KRPAIGVAPVWAANLSTARWPNAR 277
           ++ A+  A  W  N    +WPNAR
Sbjct: 564 RQRAVAEAKTWGENSRERKWPNAR 587


>02_02_0625 -
           12339623-12339707,12339938-12340062,12340844-12340996,
           12342037-12342102,12343374-12343443,12343523-12343593,
           12343664-12343795,12344042-12344130,12344189-12344270,
           12344743-12344811,12345641-12345730,12345856-12345918,
           12346158-12346217
          Length = 384

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 142 HLEINIFRSQMGGRRKHLSHIFLAER 65
           HL  ++   ++GG  +HL H+F + R
Sbjct: 47  HLRSDVGCGEIGGNNRHLDHLFDSSR 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,316
Number of Sequences: 37544
Number of extensions: 210018
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)