Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N10
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    24   5.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    24   7.0  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    24   7.0  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    23   9.2  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -1

Query: 72  VECSGMKYICLS 37
           VECSGMKY+ LS
Sbjct: 70  VECSGMKYMELS 81


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -1

Query: 270 RQKLKTAVLRTVSGARARCCFVPGLAADAPRSTSIIR--RVVTQA 142
           R + +T  +RT +G +   C  PG A    RS  + R  R+ T A
Sbjct: 37  RLEHQTRHIRTHTGEKPHVCTFPGCAKRFSRSDELTRHARIHTNA 81


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 225 ERHSPCATLQFSVSDVLILVIFYLFNYISIQKKKK 329
           ++H   A    + + +L  + +YL++Y+S+ K+ K
Sbjct: 225 KKHHIGAVNSINWARILSQITYYLYSYLSVYKQGK 259


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -3

Query: 214 LLCSRTGSRRASL---YLDNTQGCHSGNNHIFFSFLSLIKSIT 95
           +LC   GS    L   +   T+G    +N  F  FLSLI S+T
Sbjct: 300 ILCGCLGSVLIYLNMKFASKTKGFSKISNVFFVIFLSLITSLT 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,927
Number of Sequences: 5004
Number of extensions: 19032
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)