Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N10
(333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0221 - 1646774-1647400,1647525-1647671,1647771-1647813,164... 28 2.1
02_04_0612 + 24370446-24373044,24373135-24373541 28 2.1
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324... 28 2.1
05_06_0155 - 26028923-26030263 27 4.9
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 4.9
10_02_0073 + 4940672-4940699,4941172-4941250,4941685-4941775 26 6.4
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 26 6.4
11_06_0679 - 26227654-26227770,26234067-26236217 26 8.5
10_05_0096 - 9144683-9145270 26 8.5
03_03_0250 - 15845079-15845345,15846303-15846397,15846563-158466... 26 8.5
>05_01_0221 -
1646774-1647400,1647525-1647671,1647771-1647813,
1648341-1648675
Length = 383
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 226 SGALLLCSRTGSRRASLYLDNTQGCHSGNNHIFFSFLSLIKSITR--TSS*KNCRVLWDE 53
S + +C+RT + + + +D T G + +++ F F + S + SS +LW
Sbjct: 74 SSNVSVCARTDAMQCDMQVDLTGGYYDSGDNVKFGFPMAVPSAAKFYASSGDEDELLWAA 133
Query: 52 IYLLEST 32
+L +T
Sbjct: 134 AWLYIAT 140
>02_04_0612 + 24370446-24373044,24373135-24373541
Length = 1001
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 117 YL*LNQLPGLLRRKTVECSGMKYICLSRRASAPDKPPS 4
YL N L G++ + CS + YI LS A PP+
Sbjct: 132 YLYKNNLTGIIPDELTNCSSLTYIDLSGNALTGALPPN 169
>01_01_0426 +
3234987-3235935,3236744-3236782,3237044-3237409,
3240871-3242315
Length = 932
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 202 RTGSRRASLYLDNTQGCHSGNNHIFFSFLSLIKSI 98
RT + SLY DNT + GN +F L+ K+I
Sbjct: 874 RTKASIKSLYQDNTAVTYKGNTLMFTKILTTFKAI 908
>05_06_0155 - 26028923-26030263
Length = 446
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 4 RGRLIRRGSSSTQADIFHPRALDSFSTKKSW 96
+GR + GS + QAD+ RA +F T W
Sbjct: 312 KGRGLAAGSWAPQADVLRHRATGAFVTHCGW 342
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 219 RCCFVPGLAADAPRSTSIIRRVVTQATIIFF 127
RC + PGLA +S +I ++ T+ TI F
Sbjct: 617 RCTYDPGLAGTILKSFHVILQLATEQTISSF 647
>10_02_0073 + 4940672-4940699,4941172-4941250,4941685-4941775
Length = 65
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 145 LSDNPAYYRGR--ARRVGCQSGNKAAARPSATH 237
L+++P RGR A R+G SG+ AAA A+H
Sbjct: 26 LTNSPQAARGRGVAARLGGGSGSGAAAEQDASH 58
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 50 YFIPEHSTVFLRRSPGN*FN 109
Y+I HS +F+ SPGN N
Sbjct: 403 YYISMHSDIFISASPGNMHN 422
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 161 RIIEVERGASAASPGTKQQRARAPLTVRNTAVFSF*RLDP 280
R+I G S+ +K+QR VR TAVF L P
Sbjct: 692 RVINAITGGSSLGVESKRQRKAYVRQVRRTAVFELFCLSP 731
>10_05_0096 - 9144683-9145270
Length = 195
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 253 CSVAHGEWRSGALLLCSRTGSRRASLYLDNTQGCHSGNN 137
C A G WRSG LL+ + T + Y+ H N+
Sbjct: 7 CHSASGNWRSGPLLVYACTATPGDPAYMSFAPVWHGLNS 45
>03_03_0250 -
15845079-15845345,15846303-15846397,15846563-15846671,
15846981-15847059,15847286-15847355,15847632-15847730,
15847906-15847930
Length = 247
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 189 RLPVREQSSSAPERHSPCATLQFSVSDVLILVI 287
R P + +AP HSP AT+ + S +VI
Sbjct: 165 RTPTLPYTRTAPPPHSPPATIALATSFTFFMVI 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,926,524
Number of Sequences: 37544
Number of extensions: 132450
Number of successful extensions: 444
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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