Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N10
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    27   4.3  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    25   10.0 
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    25   10.0 
AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 192 ADAPRSTSIIRRVVTQATI 136
           A APR+TS++RR++  A++
Sbjct: 336 ASAPRTTSMLRRIINAASV 354


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 192 ADAPRSTSIIRRVVTQATI 136
           A APR+TS++RR++  A++
Sbjct: 336 ASAPRTTSMLRRIINAASV 354


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +3

Query: 255 FSVSDVLILVI---FYLFNYISIQKKKKK 332
           FS + VL L +   FY++ Y+SI+K++ K
Sbjct: 56  FSTTIVLCLSLIHWFYVYKYVSIEKRRNK 84


>Z83239-5|CAB05809.1|  160|Caenorhabditis elegans Hypothetical
           protein T09F5.9 protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 256 NCSVAHGEWRSGALLLCSRTGSRRASLYLDNTQGCHSG 143
           N S+ +  +     L CS TG+  A  + D+T+  +SG
Sbjct: 77  NSSITNDNYNYWLGLKCSETGNPNACAWADSTKFSYSG 114


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 193 SRRASLYLDNTQGCHSGNNHIFF 125
           SR    +L N  GC   N H+FF
Sbjct: 740 SRARHPFLVNLNGCFQTNEHVFF 762


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 193 SRRASLYLDNTQGCHSGNNHIFF 125
           SR    +L N  GC   N H+FF
Sbjct: 740 SRARHPFLVNLNGCFQTNEHVFF 762


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical
           protein R13G10.1 protein.
          Length = 1469

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 15  YPARKLVDSSRYISSQSTRQFFY--EEVLVIDLIRD 116
           +PA +L D    ++ +  R+F++   ++LV+D + +
Sbjct: 697 FPAERLFDKIHCVNPEIRREFYFLIHDILVVDSLEE 732


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
           condensation protein protein.
          Length = 1469

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/36 (25%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 15  YPARKLVDSSRYISSQSTRQFFY--EEVLVIDLIRD 116
           +PA +L D    ++ +  R+F++   ++LV+D + +
Sbjct: 697 FPAERLFDKIHCVNPEIRREFYFLIHDILVVDSLEE 732


>AF022975-1|AAB70675.3|  587|Caenorhabditis elegans Hypothetical
           protein K09C6.7 protein.
          Length = 587

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 149 VTTLRIIEVERGASAASPGTKQQRARAPLTVRNTAVFSF*RLDPCYFL 292
           V TL  +E+E      S GTK      P+T ++  + +  R+  C +L
Sbjct: 230 VQTLNSVEIESNFKHISKGTKFMLGNMPMTTKDDVIGNMGRV-VCRYL 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,758,203
Number of Sequences: 27780
Number of extensions: 114555
Number of successful extensions: 307
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)