Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N09
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    34   0.003
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    25   1.4  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    25   1.4  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    24   2.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   3.2  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    23   4.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    23   4.2  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    23   7.3  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    23   7.3  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +1

Query: 67  MGNMFANLFKGLFGKKEMRILMV 135
           MG   + LF+ LFGK+EMRILMV
Sbjct: 1   MGLSISKLFQSLFGKREMRILMV 23


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 79  FANLFKGLFGKKEMRILMV 135
           F+  F  LF  KEMRILM+
Sbjct: 9   FSKPFSRLFSNKEMRILML 27


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 34  ASEKYYS--QSIKMGNMFANLFKGLFGKKEMRIL 129
           +S+K++S   SIK    F  +F G+F KK    L
Sbjct: 212 SSDKFWSTLNSIKYFTAFPAIFLGIFAKKRFSFL 245


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 122 LISFLPKRPLNKFANIFPIFMLCE*YFSEAKVFRIKKKP 6
           L  FLPK    K A+  P FM  E + +E K  +IK KP
Sbjct: 221 LAEFLPKDGFVKPASGTPAFMAPELFDNELK--KIKGKP 257


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 119 ISFLPKRPLNKFANIFPIFML 57
           +SF+PK   N+F NI   F L
Sbjct: 141 VSFIPKNLWNQFKNIANAFFL 161


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 87  ICKHIPHFYALRIVFFRSKGF 25
           +CK +  F+   I+FFRSK F
Sbjct: 498 LCKEL--FHRRTIIFFRSKAF 516


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 40   EKYYSQSIKMGNMFANLFKGLFGKKEMR 123
            E YY  S KM N    LFK L  ++  R
Sbjct: 923  EAYYMASNKMANKTEALFKDLIREQRER 950


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 91  INLQTYSPFLCFANSIFQKQRF 26
           +NLQ     L +A SIF K+ F
Sbjct: 371 LNLQLLEKILQYATSIFPKRSF 392


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 40  EKYYSQSIKMGNMFANLFKGL 102
           EKY  ++ K+ + FA+L +GL
Sbjct: 117 EKYEKENPKVSSQFADLKRGL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,816
Number of Sequences: 5004
Number of extensions: 6831
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)