Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N09
(136 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0842 + 6840943-6841288,6841800-6841970,6842762-6842832,684... 36 0.003
07_01_0844 + 6855195-6855342,6855752-6855802,6856460-6856530,685... 33 0.024
05_05_0295 - 23912502-23912507,23912631-23912712,23913020-239131... 33 0.024
03_06_0420 + 33794045-33794192,33794831-33794901,33795093-337952... 33 0.024
01_06_1108 + 34574299-34574446,34575000-34575070,34575246-345753... 33 0.024
01_01_1138 - 9019049-9019159,9019525-9019606,9020059-9020177,902... 33 0.024
10_08_1062 + 22626262-22626318,22626404-22626494,22626601-226267... 31 0.17
02_05_0413 + 28773869-28773925,28774045-28774135,28774515-287746... 28 0.91
08_01_0921 + 9075409-9075511,9075606-9075689,9075744-9075806,907... 28 1.2
03_02_0013 - 4921925-4922077,4922176-4922252,4922360-4922445,492... 27 2.8
>07_01_0842 +
6840943-6841288,6841800-6841970,6842762-6842832,
6843068-6843187,6843654-6843772,6844045-6844126,
6844254-6844259
Length = 304
Score = 36.3 bits (80), Expect = 0.003
Identities = 21/37 (56%), Positives = 22/37 (59%)
Frame = +1
Query: 25 KTFASEKYYSQSIKMGNMFANLFKGLFGKKEMRILMV 135
K SEK + KMG F LF LF KKEMRILMV
Sbjct: 112 KLMPSEK--EEGGKMGLAFGKLFSRLFAKKEMRILMV 146
>07_01_0844 +
6855195-6855342,6855752-6855802,6856460-6856530,
6856736-6856855,6857043-6857161,6857377-6857458,
6857592-6857597
Length = 198
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF LF KKEMRILMV
Sbjct: 1 MGLAFGKLFSRLFAKKEMRILMV 23
>05_05_0295 -
23912502-23912507,23912631-23912712,23913020-23913138,
23913480-23913599,23913927-23913997,23914525-23914672
Length = 181
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF LF KKEMRILMV
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMV 23
>03_06_0420 +
33794045-33794192,33794831-33794901,33795093-33795212,
33795466-33795584,33795775-33795856,33795984-33795989
Length = 181
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF LF KKEMRILMV
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMV 23
>01_06_1108 +
34574299-34574446,34575000-34575070,34575246-34575365,
34575471-34575488,34575708-34575826,34576244-34576325,
34576537-34576542
Length = 187
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF LF KKEMRILMV
Sbjct: 1 MGLTFTKLFSRLFAKKEMRILMV 23
>01_01_1138 -
9019049-9019159,9019525-9019606,9020059-9020177,
9020977-9021096,9021313-9021383,9021801-9021948
Length = 216
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/23 (69%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF LF KKEMRILMV
Sbjct: 1 MGLTFTKLFSRLFSKKEMRILMV 23
>10_08_1062 +
22626262-22626318,22626404-22626494,22626601-22626716,
22627035-22627094,22627204-22627269,22627726-22627914
Length = 192
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF FG KEMR++M+
Sbjct: 1 MGQAFRKLFDAFFGNKEMRVVML 23
>02_05_0413 +
28773869-28773925,28774045-28774135,28774515-28774630,
28775627-28775686,28775767-28775832,28776499-28776693
Length = 194
Score = 28.3 bits (60), Expect = 0.91
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG F LF FG EMR++M+
Sbjct: 1 MGQAFRKLFDAFFGTSEMRVVML 23
>08_01_0921 +
9075409-9075511,9075606-9075689,9075744-9075806,
9077163-9077181,9078227-9078338,9078902-9078949,
9079372-9079502,9079673-9079757,9079776-9079784
Length = 217
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 67 MGNMFANLFKGLFGKKEMRILMV 135
MG +F LF +FG +E RIL++
Sbjct: 1 MGIVFTRLFSSVFGNREARILVL 23
>03_02_0013 -
4921925-4922077,4922176-4922252,4922360-4922445,
4922527-4922720,4922829-4923115,4923219-4923345,
4923586-4923816,4923982-4924047,4925300-4925474,
4925563-4925770,4925886-4925934,4926249-4926578
Length = 660
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 91 INLQTYSPFLCFANSIFQKQRFLE 20
+ ++ + FLCF NS F K+R +E
Sbjct: 536 LTIRIDTSFLCFINSTFIKERIIE 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,664
Number of Sequences: 37544
Number of extensions: 32426
Number of successful extensions: 66
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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