Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N09
         (136 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-19|AAK18851.1|  181|Caenorhabditis elegans Adp-ribosylati...    45   9e-06
AY519855-1|AAR89636.1|  180|Caenorhabditis elegans ADP-ribosylat...    30   0.20 
AF045644-6|AAC02598.1|  180|Caenorhabditis elegans Adp-ribosylat...    30   0.20 
Z49967-8|CAA90255.1|  180|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine re...    25   9.8  

>U32305-19|AAK18851.1|  181|Caenorhabditis elegans Adp-ribosylation
           factor relatedprotein 1.2 protein.
          Length = 181

 Score = 44.8 bits (101), Expect = 9e-06
 Identities = 19/23 (82%), Positives = 22/23 (95%)
 Frame = +1

Query: 67  MGNMFANLFKGLFGKKEMRILMV 135
           MGN+F +LFKGLFGK+EMRILMV
Sbjct: 1   MGNVFGSLFKGLFGKREMRILMV 23


>AY519855-1|AAR89636.1|  180|Caenorhabditis elegans ADP-ribosylation
           factor related(20.5 kD) (arf-3) protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 67  MGNMFANLFKGLFGKKEMRILMV 135
           MG   ++LF  LFGK+++RILMV
Sbjct: 1   MGLTISSLFNRLFGKRQVRILMV 23


>AF045644-6|AAC02598.1|  180|Caenorhabditis elegans Adp-ribosylation
           factor relatedprotein 3 protein.
          Length = 180

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +1

Query: 67  MGNMFANLFKGLFGKKEMRILMV 135
           MG   ++LF  LFGK+++RILMV
Sbjct: 1   MGLTISSLFNRLFGKRQVRILMV 23


>Z49967-8|CAA90255.1|  180|Caenorhabditis elegans Hypothetical
           protein F54C9.10 protein.
          Length = 180

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 67  MGNMFANLFKGLFGKKEMRILMV 135
           MG + +  F+GLFG +EMRIL++
Sbjct: 1   MGGVMS-YFRGLFGAREMRILIL 22


>AC084197-1|AAG23478.1|  328|Caenorhabditis elegans Serpentine
           receptor, class v protein24 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 10  FFLILKTFASEKYYSQSIKMGNMF 81
           FF+IL  +A + Y+SQ+   G +F
Sbjct: 222 FFVILVYYAFQNYFSQTHNTGPIF 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,425
Number of Sequences: 27780
Number of extensions: 36504
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)