Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N08
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   245   9e-66
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    48   4e-06
U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase pro...    29   1.4  
AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kin...    29   1.4  
AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.3  
AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical...    26   9.8  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    26   9.8  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  245 bits (600), Expect = 9e-66
 Identities = 110/134 (82%), Positives = 123/134 (91%)
 Frame = +3

Query: 24  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 203
           MGKP+G+ TARK   HR+EQRW DK +KKAH+GTRWK+NPFGGASHAKGIVLEK+GVEAK
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAK 60

Query: 204 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*VAGFGRKGHAVGDIPGVRF 383
           QPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN +EENDEV V+GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 384 KVVKVANVSLLALY 425
           K+VKVAN SL+AL+
Sbjct: 121 KIVKVANTSLIALF 134


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 29/66 (43%), Positives = 42/66 (63%)
 Frame = +3

Query: 150 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEV*V 329
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +V V
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 330 AGFGRK 347
            G GR+
Sbjct: 129 KG-GRR 133


>U58750-2|AAB00642.1|  615|Caenorhabditis elegans Polo kinase
           protein 3 protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 410 RHVCYLNHLKSDSRNVTNSVAFTTESCNSHLIVLLNVVEATITRHE 273
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF059024-1|AAC14425.1|  615|Caenorhabditis elegans polo-like kinase
           protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 410 RHVCYLNHLKSDSRNVTNSVAFTTESCNSHLIVLLNVVEATITRHE 273
           R++   +H   DS+NV     FT E C+ + ++ LN     +T HE
Sbjct: 93  RNIVQFHHFFEDSQNVY----FTLELCSKNSLMELNKQRGPLTEHE 134


>AF036693-4|AAK29786.1|  360|Caenorhabditis elegans Hypothetical
           protein C49A9.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
 Frame = +3

Query: 21  VMGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFG--------GASHAKGIV 176
           V  K   +  + KH  H  +  + D  FKK   GTRW    +G        G  + +G +
Sbjct: 235 VDSKTESLFVSNKH--HLEQGHFFDGNFKKNADGTRWTCQNYGQPVEQLAEGGINQRGKI 292

Query: 177 LEKVGVEAKQPNSAIRK 227
              V +E  QP    RK
Sbjct: 293 FFTVKIENFQPARGNRK 309


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 267 TAFVPRDGCLNHIEEN 314
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>AL032632-13|CAA21587.2|  507|Caenorhabditis elegans Hypothetical
           protein Y11D7A.12a protein.
          Length = 507

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 398 YLNHLKSDSRNVTNSVAFTTESCNSHLIVLLNVVEATI 285
           +LN++K++  N+  +  FT E    H+   L +  ATI
Sbjct: 308 FLNNIKTEMSNMVKNEQFTPERYTQHMSPNLPLQTATI 345


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  SSSRAAMGRQGIQKSPHGYEMEGEPLRWCI 157
           S SR+   R+   +SP   E   +P RWC+
Sbjct: 579 SRSRSPPRRRRRSRSPRRREEHTDPTRWCV 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,793
Number of Sequences: 27780
Number of extensions: 229869
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)