Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N07
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    29   0.080
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   0.75 
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   0.99 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   3.0  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    23   5.3  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    23   5.3  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    23   5.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    23   5.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    23   9.2  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 29.5 bits (63), Expect = 0.080
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 106 GVHISNSSEVATVFQDYFTNIPLEVTKHITSSPQGAALLLNNLSAPIN 249
           G+H     E+A    D    +     + +  +PQG   L+NNL  P++
Sbjct: 186 GIHAWICDEIACSLDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLH 233


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 0.75
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 160 TNIPLEVTKHITSSPQGAALLLN 228
           TN+ +   KH+ SS QG  LL+N
Sbjct: 253 TNVAVPCLKHLESSEQGNNLLIN 275


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 0.99
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 111 YSVNVQIKCIIIYFTISCFF 52
           +SV + I C I++  I CFF
Sbjct: 120 FSVTIGITCPIVFIAIFCFF 139


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 184 KHITSSPQGAALLLNNLSAPINSKFY 261
           KH   S    ALL N LS   NS++Y
Sbjct: 74  KHKEMSSDDRALLFNELSKVPNSEYY 99


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 HITSSPQGAALLLNNLSAPINSK 255
           H TS+P  A++   N   PIN+K
Sbjct: 462 HRTSNPTSASVTSQNGQQPINTK 484


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 111 YSVNVQIKCIIIYFTISCFF 52
           +SV + I C I++    CFF
Sbjct: 121 FSVTIGITCPILFIATFCFF 140


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 127 SEVATVFQDYFTNIPLEVT 183
           SE  + F DY+ +IPL+V+
Sbjct: 668 SEQNSAFLDYYMDIPLDVS 686


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 103  DGVHISNSSEVATVFQDYFTNIPLEVTKHITSSPQGAALLLNNLSAPINS 252
            DG+ +  +S ++         I   V+  + SSP  A + +  LS P N+
Sbjct: 903  DGISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLSNPPNT 952


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 186 FCNFKRYVSEVVLKNSCYL 130
           FCN + +VS   + N+C+L
Sbjct: 196 FCNVEVHVSPNAILNACWL 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,067
Number of Sequences: 5004
Number of extensions: 15296
Number of successful extensions: 61
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)