Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N07
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411     27   2.7  
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688...    26   4.8  
08_02_0501 + 17836948-17837373,17837857-17839184,17839270-178393...    25   6.3  
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659           25   6.3  
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917...    25   6.3  
07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426...    25   8.3  

>05_03_0652 + 16606987-16607443,16607542-16607652,16609317-16609411
          Length = 220

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 87  CIIIYFTISCFFIYD 43
           CII  F +SCFF++D
Sbjct: 193 CIIHLFGLSCFFVFD 207


>03_01_0006 +
           65675-65808,66385-66457,68290-68526,68648-68785,
           68871-69005,69131-69310,69495-69701,69821-69943,
           70240-70359,70758-70880,72067-72171,72254-72398,
           73443-73607,73669-73907,74452-74484,74977-75058,
           75200-75360,75739-75951,76789-76971,77051-77220,
           77375-77474
          Length = 1021

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 6/26 (23%), Positives = 19/26 (73%)
 Frame = -3

Query: 114 MYSVNVQIKCIIIYFTISCFFIYDVP 37
           +Y+V++ ++ ++ +  ++CF+ +D P
Sbjct: 709 IYAVSITVRIVLGFLLLACFWKFDFP 734


>08_02_0501 +
           17836948-17837373,17837857-17839184,17839270-17839380,
           17839719-17839998,17840275-17840396,17840451-17840556,
           17840814-17841020,17841130-17841255,17841719-17841817,
           17842265-17842456,17842555-17843073
          Length = 1171

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 95  RLSVLLFILLFPVSLFMMCQTGTRPRAE 12
           ++  LLF++LF ++ F     G R RAE
Sbjct: 312 KIIYLLFVILFAIASFGSVMFGIRTRAE 339


>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
          Length = 175

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +1

Query: 19  RGLVPVWHIINKETGNSKIXXXXXXXXVDGVHISNSSEVATVFQDYF 159
           +GL+PV+      T   +I        VD VH++N    A   +D +
Sbjct: 117 KGLIPVFEDRTSPTKEIEISILLMALRVDRVHVANILITAKYAEDLY 163


>01_05_0762 +
           24990915-24990970,24991076-24991592,24991676-24991753,
           24993678-24993743,24994819-24994943,24995414-24995612,
           24995909-24996137,24996259-24996425,24996526-24996735,
           24997245-24997355,24997436-24997612,24997826-24998284,
           24998676-24998966
          Length = 894

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 145 FQDYFTNIPLEVTKHITSSPQGAALLLN 228
           FQ  +  + L +++  + SPQGAA L+N
Sbjct: 785 FQKKWGQLALSLSQECSLSPQGAASLMN 812


>07_03_0232 +
           15539586-15539696,15541524-15541727,15542612-15542674,
           15542896-15543027,15543766-15543889,15545052-15545365,
           15545538-15545614,15545716-15545851,15546352-15546555,
           15546630-15546689
          Length = 474

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 NSSEVATVFQDYFTNIPLEVTKHI 192
           +SSE A  F DYFT++ ++  + I
Sbjct: 234 SSSEDAVCFDDYFTSVVMKYAEKI 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,989,283
Number of Sequences: 37544
Number of extensions: 85929
Number of successful extensions: 206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)