Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N07
         (263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical...    27   1.8  
Z82264-4|CAB05162.1|  491|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U41559-5|AAC24258.1|  217|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    25   5.6  
AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical ...    25   9.8  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z81035-9|CAB02734.1|  628|Caenorhabditis elegans Hypothetical
           protein C15H11.3 protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 111 YSVNVQIKCIIIYFTISCFFIYDVPDG 31
           Y  N QI+ ++  F  S F  YD PDG
Sbjct: 356 YYPNPQIRVLVEQFVTSYFDFYDGPDG 382


>AF016451-12|AAB65994.1|  317|Caenorhabditis elegans Hypothetical
           protein C03A7.13 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 52  KETGNSKIXXXXXXXXVDGVHISNSSEVATVFQDY-FTNIPLEVTKHITSSPQGAALLLN 228
           K  GNSK         ++G   S  S +A+ F+D  FT    +V   I ++   +AL   
Sbjct: 65  KGHGNSKASKFYELESINGSDWSKLSHLASPFEDRPFTFNGFQVYNKIGNALCESALADQ 124

Query: 229 NLSAPINSKFY 261
           NL A + S+ Y
Sbjct: 125 NLHAFLTSRQY 135


>Z82264-4|CAB05162.1|  491|Caenorhabditis elegans Hypothetical
           protein C49C3.9 protein.
          Length = 491

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = -3

Query: 117 NMYSVNVQI--KCIIIYFTISCFFIYD--VPDGH 28
           N YS+N+ +  + +++Y  +S FFIYD  V  GH
Sbjct: 173 NSYSINLALFTEGVLVYNLLSNFFIYDGGVYKGH 206


>Z54342-9|CAA91153.1|  399|Caenorhabditis elegans Hypothetical
           protein C08H9.14 protein.
          Length = 399

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -1

Query: 107 PSTFRLSVLLFILLF 63
           P T++L++L+F+LLF
Sbjct: 2   PKTYKLAILIFVLLF 16


>U41559-5|AAC24258.1|  217|Caenorhabditis elegans Hypothetical
           protein C26B2.2 protein.
          Length = 217

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 103 DGVHISNSSEVATVFQDYFTNIP 171
           +  H+S +S++ + F D+FTN P
Sbjct: 8   ESAHMS-ASDIISTFNDFFTNFP 29


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 101 TFRLSVLLFILLFPVSLFMM 42
           TFR ++LL +L  PVSL  M
Sbjct: 123 TFRTTILLIVLSIPVSLGFM 142


>AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical
           protein T24C4.6a protein.
          Length = 860

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 69  TISCFFIYDVPDGHEA 22
           T++C  +YDVPD + A
Sbjct: 304 TLTCLILYDVPDLYHA 319


>AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical
           protein T24C4.6b protein.
          Length = 895

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 69  TISCFFIYDVPDGHEA 22
           T++C  +YDVPD + A
Sbjct: 304 TLTCLILYDVPDLYHA 319


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 113 CTPSTFRLSVLLFILLFPVSLFMMCQTGTRPRAE 12
           C+ ST  + +   +LLF + L  +C+  T P +E
Sbjct: 87  CSDSTDFVEMKSLLLLFLLFLHTLCENVTTPNSE 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,374,156
Number of Sequences: 27780
Number of extensions: 85049
Number of successful extensions: 233
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)