Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N07
         (263 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    24   0.36 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   2.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   2.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   4.5  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 GVHISNSSEVATVFQDYFTNIPLEVTKHIT 195
           G++ SNSS V T+F    T + L + K  T
Sbjct: 270 GIYGSNSSTVGTIFGYQGTYVNLVIVKVFT 299


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 111 YSVNVQIKCI-IIYFTISCFFI 49
           Y+VN+ I C+ I + T+  F++
Sbjct: 252 YTVNLIIPCVGITFLTVLVFYL 273


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 236 LKLLRSNAAPWGDEVI 189
           ++L RSN  PW ++ +
Sbjct: 562 IELSRSNPTPWSEDAM 577


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 106 GVHISNSSEVATVF 147
           G++ SNSS V T+F
Sbjct: 270 GIYGSNSSTVGTIF 283


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 111 YSVNVQIKCI-IIYFTISCFFI 49
           Y+VN+ I C+ I + T+  F++
Sbjct: 247 YTVNIIIPCMGISFLTVLTFYL 268


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 111 YSVNVQIKCI-IIYFTISCFFI 49
           Y+VN+ I C+ I + T+  F++
Sbjct: 247 YTVNIIIPCMGISFLTVLTFYL 268


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 111 YSVNVQIKCIIIYFTISCFFIYDVPDGHEASCRI 10
           Y+VN+ I C+ I F     F      G + S  I
Sbjct: 239 YTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLSI 272


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 111 YSVNVQIKCIIIYFTISCFFIYDVPDGHEASCRI 10
           Y+VN+ I C+ I F     F      G + S  I
Sbjct: 243 YTVNLIIPCMGISFLTVLVFYLPSDSGEKVSLSI 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.131    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,321
Number of Sequences: 438
Number of extensions: 1052
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)