Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N05
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...   109   1e-25
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...   109   2e-25
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   1.6  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   4.4  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   5.8  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   7.7  

>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score =  109 bits (263), Expect = 1e-25
 Identities = 54/125 (43%), Positives = 69/125 (55%)
 Frame = +1

Query: 28  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 207
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 208 FHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 387
           FH+ +N  + P +NLD+LWTL+  +AR KY        PVIN++++           P+ 
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLLPNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPET 120

Query: 388 PVIVK 402
           PVIV+
Sbjct: 121 PVIVQ 125


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  109 bits (261), Expect = 2e-25
 Identities = 53/125 (42%), Positives = 67/125 (53%)
 Frame = +1

Query: 28  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 207
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 208 FHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 387
           FH+ +N  + P +NLD+LWTLV  + R KY        PVIN++++           P  
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLVPNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDT 120

Query: 388 PVIVK 402
           PVI++
Sbjct: 121 PVIIQ 125


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 139 HHQHYHVHQD 110
           HH H+H H D
Sbjct: 305 HHHHHHSHDD 314



 Score = 22.2 bits (45), Expect(2) = 1.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 148 DGAHHQHYHVH 116
           +G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = -1

Query: 304 QMHTLVLPAQRPESTVCQDLK--QGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQ 131
           ++H +     RP+  V    +  +GR+      G  +    +  QGG       +G HH 
Sbjct: 688 KLHFVQKDESRPKEPVVDAAQKHEGRSETLAQPGQQNANQSEEKQGGQNGS---NGGHHH 744

Query: 130 HYHVH 116
           H+H H
Sbjct: 745 HHHHH 749


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 172 HPGYFGKLGMRNFHMRRNKDFCPVLNLDKL 261
           HP YF  L    F     +D C +L+  K+
Sbjct: 741 HPPYFDDLATTTFSSLLKRDECTILSFFKI 770


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 324 RHLAICGRCIL*SCLLRDQSPQ 259
           RH  +CGR I   C+L    PQ
Sbjct: 295 RHCRLCGRVICRFCVLEISLPQ 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,227
Number of Sequences: 5004
Number of extensions: 26854
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)