Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_N05
(403 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1250 - 25183375-25183815 111 2e-25
03_04_0027 + 16593133-16593573 107 3e-24
02_01_0563 + 4134954-4135388 105 2e-23
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 31 0.34
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 26 0.35
01_01_0433 + 3282195-3285185 30 0.60
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 23 1.3
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 29 1.8
12_01_0981 + 9931542-9931606,9931779-9933105 27 7.3
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234... 27 7.3
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 7.3
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 7.3
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579... 26 9.7
>07_03_1250 - 25183375-25183815
Length = 146
Score = 111 bits (267), Expect = 2e-25
Identities = 52/125 (41%), Positives = 72/125 (57%)
Frame = +1
Query: 28 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 207
M TS +K RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 208 FHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 387
FH RNK + P +N+++LW++V + + A A GK P++++ + P++
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGA--GKAPLLDVTQFGYFKVLGKGLLPEK 118
Query: 388 PVIVK 402
P++VK
Sbjct: 119 PIVVK 123
>03_04_0027 + 16593133-16593573
Length = 146
Score = 107 bits (257), Expect = 3e-24
Identities = 55/126 (43%), Positives = 68/126 (53%), Gaps = 1/126 (0%)
Frame = +1
Query: 28 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 207
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 208 FHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 387
FH N+ CP +N+++LW++V K A A GK PVI++ + P Q
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTD---KAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQ 117
Query: 388 -PVIVK 402
P++VK
Sbjct: 118 RPIVVK 123
>02_01_0563 + 4134954-4135388
Length = 144
Score = 105 bits (251), Expect = 2e-23
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +1
Query: 28 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 207
M T KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 208 FHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVK-AXXXXXXXXXXXPK 384
FH N+ CP +N+++LW++V + A A GK PVI++ + P+
Sbjct: 61 FHRLSNRFHCPAVNVERLWSMVPAE-----AGAGAGKAPVIDVTQFGYTKVLGKGMLPPE 115
Query: 385 QPVIVK 402
+P++VK
Sbjct: 116 RPIVVK 121
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 145 GAHHQHYHVHQDAYGACRYDHDH 77
G HH+H+H H+ +G DH H
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDHHH 555
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 25.8 bits (54), Expect(2) = 0.35
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 148 DGAHHQHYHVHQ 113
D HH H+HVHQ
Sbjct: 42 DVGHHHHHHVHQ 53
Score = 23.8 bits (49), Expect(2) = 0.35
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 139 HHQHYHVHQDAYG 101
HH H H HQ +G
Sbjct: 47 HHHHVHQHQQQHG 59
>01_01_0433 + 3282195-3285185
Length = 996
Score = 30.3 bits (65), Expect = 0.60
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 147 SQNQ-HGQVPPWVLWQTWYEKF 209
S NQ +G +PPW W+TW E F
Sbjct: 524 SNNQMNGAIPPWA-WETWKESF 544
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 23.4 bits (48), Expect(3) = 1.3
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = -1
Query: 139 HHQHYHVHQDA 107
HH H+H H+D+
Sbjct: 356 HHHHHHGHEDS 366
Score = 21.4 bits (43), Expect(3) = 1.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -1
Query: 145 GAHHQHYHVH 116
G HH H+H H
Sbjct: 352 GHHHHHHHHH 361
Score = 21.0 bits (42), Expect(3) = 1.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -1
Query: 130 HYHVHQDAYGA 98
HY VH+ YGA
Sbjct: 377 HYPVHEPRYGA 387
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 232 NPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQHYHVHQDAYGACRY 89
+P + N QV T + P C G HH H+H G+C +
Sbjct: 140 SPLYLGGTNTVLQVQDMTMMSSTPA--CYGEHHHHHHHQLTKEGSCNH 185
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 26.6 bits (56), Expect = 7.3
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 142 HHHRINMDKYHPGYFGKLGMRNFHMR-RNKDFCPVLNLDKL--WTLVSEQARLKYASATD 312
HHH+ N + +HP Y + + R RN DF P D L W +E+ Y + +
Sbjct: 161 HHHQYNPEPHHPHYEHRPHYADPAKRSRNVDF-PTFEGDYLESWIRKAEKYFSLYQTPEE 219
Query: 313 GKV 321
KV
Sbjct: 220 DKV 222
>11_06_0213 -
21321676-21322069,21322311-21322507,21322818-21323477,
21323522-21323578,21324741-21324848
Length = 471
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 192 TWYEKFPHEKKQGFLPCFKS 251
TWYE+FPH GF CF +
Sbjct: 435 TWYERFPH---FGFEHCFNN 451
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 148 DGAHHQHYHVHQDAYG 101
D HH H+H H DA G
Sbjct: 48 DHQHHHHHHHHHDAAG 63
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 133 GGEHHHRINMDKYH 174
GG HHH+ NM K H
Sbjct: 313 GGGHHHKQNMQKQH 326
>09_02_0207 -
5793848-5794276,5794523-5794645,5794742-5795250,
5795543-5795648,5795798-5795959,5796094-5796144,
5796229-5796394,5796624-5797093
Length = 671
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 293 FSLACSETRVHSLSRFKTGQKSLFLLMWKFLIPSLPKYPGWYLSML 156
++L C R+ L G+ L +L + IP LPKY S++
Sbjct: 229 WALGCLLYRICYLKSAFDGESKLQILNGNYRIPELPKYSSPITSLI 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,290
Number of Sequences: 37544
Number of extensions: 196550
Number of successful extensions: 649
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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