Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N05
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   127   3e-30
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    58   3e-09
AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin...    29   1.2  
Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lecti...    27   6.7  
AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical ...    23   7.6  
AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical ...    23   7.6  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    26   8.8  
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  127 bits (306), Expect = 3e-30
 Identities = 60/125 (48%), Positives = 78/125 (62%)
 Frame = +1

Query: 28  MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 207
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 208 FHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXXPKQ 387
           FH+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K            P+ 
Sbjct: 61  FHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLLPET 117

Query: 388 PVIVK 402
           P+IVK
Sbjct: 118 PLIVK 122


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = +1

Query: 199 MRNFHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKAXXXXXXXXXXX 378
           MR FH+ +N+ +CP +N+++LW+LV ++ R K   AT GK PVI+  K            
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK---ATGGKSPVIDCTKLGYFKVLGKGLL 57

Query: 379 PKQPVIVK 402
           P+ P+IVK
Sbjct: 58  PETPLIVK 65


>AF025450-9|AAB70938.2|  409|Caenorhabditis elegans C-type lectin
           protein 3 protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -1

Query: 292 LVLPAQRPESTVCQDLKQGRNPCFFSCGNFSYQVCQSTQGGTCPC*FCD 146
           L  P   P S VC+      +PC+++  N+ Y    +    T     C+
Sbjct: 130 LSAPCTEPRSYVCETPSTHEDPCYYNYNNYCYTFSHNQSSFTTAQAICE 178


>Z68315-5|CAE48501.1|  689|Caenorhabditis elegans Hypothetical
           protein F28C6.4b protein.
          Length = 689

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 338 TMLITGTLPSVADAYFSLACSETRVHS-LSRF-KTGQKSLFL--LMWKFLIP-SLPKYPG 174
           T  +TGTLPS      +LA +E +  + +SR  K G+K  F     W  L+P S  K+ G
Sbjct: 105 TAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIGKKVHFFGDDTWIRLLPRSFEKFEG 164


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 338 TMLITGTLPSVADAYFSLACSETRVHS-LSRF-KTGQKSLFL--LMWKFLIP-SLPKYPG 174
           T  +TGTLPS      +LA +E +  + +SR  K G+K  F     W  L+P S  K+ G
Sbjct: 105 TAYLTGTLPSFGTVLTNLATAEMKTANWISRIQKIGKKVHFFGDDTWIRLLPRSFEKFEG 164


>AL117206-9|CAL22706.1|  292|Caenorhabditis elegans Hypothetical
           protein Y67A10A.11 protein.
          Length = 292

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 214 CGNFSY-QVCQSTQGGTCPC 158
           C   +Y + C STQ G CPC
Sbjct: 45  CSQINYSRTCLSTQMGNCPC 64


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 226  CFFSCGNFSYQVCQSTQGGTCP 161
            C FS  N  Y  C + QG  CP
Sbjct: 946  CRFSQSNHKYYCCGNIQGSMCP 967


>AC024817-17|AAU87811.1|  178|Caenorhabditis elegans C-type lectin
           protein 80 protein.
          Length = 178

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +1

Query: 193 LGMRNFHMRRNKDFCPVLNLDKLWTLVSEQARLKYASATDGKVPVINIVKA 345
           LG  NF+ + ++D+      +  WT  + +  LK+  +    +P  N+  +
Sbjct: 105 LGWTNFNYQNSQDYVAESVTNAKWTAYNSETELKFVCSYYPLMPTTNLASS 155


>AF100305-4|AAC68916.2|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3a protein.
          Length = 426

 Score = 23.4 bits (48), Expect(2) = 7.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 154 FCDGAHHQHYHVH 116
           + DG HH H H H
Sbjct: 410 YYDGGHHHHRHHH 422



 Score = 21.4 bits (43), Expect(2) = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 139 HHQHYHVHQD 110
           HH+H+H H D
Sbjct: 417 HHRHHHHHCD 426


>AF100305-3|AAL65795.1|  426|Caenorhabditis elegans Hypothetical
           protein W04B5.3b protein.
          Length = 426

 Score = 23.4 bits (48), Expect(2) = 7.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 154 FCDGAHHQHYHVH 116
           + DG HH H H H
Sbjct: 410 YYDGGHHHHRHHH 422



 Score = 21.4 bits (43), Expect(2) = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 139 HHQHYHVHQD 110
           HH+H+H H D
Sbjct: 417 HHRHHHHHCD 426


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 296 YFSLACSETRVHSLSRFKTGQKSLFLLMWKFLI 198
           YF+L  +    H LS       S+F  +W+FLI
Sbjct: 173 YFALGATSLSYHLLSPPDVSFNSVFARIWQFLI 205


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 265 STVCQDLKQGRNPCFFSCGNFSYQVCQS 182
           S VCQ  +   + C  SC     +VCQS
Sbjct: 106 SNVCQQKQYSSSQCASSCNRSCSRVCQS 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,471,088
Number of Sequences: 27780
Number of extensions: 167213
Number of successful extensions: 588
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)