Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N04
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   3.0  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    25   5.2  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   5.2  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    25   5.2  
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    25   6.9  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   6.9  
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    24   9.1  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 239 HEENFR-AMTAQWTLHCGRI-PRQWTRVQTHLTNS 337
           ++ N R  +T++W  H GRI    W    THL  +
Sbjct: 506 YDANSREVITSRWAFHTGRILGMSWNAKSTHLATA 540


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 276 HCTAVGFRVNGRGFKP 323
           HC + GF++NGR  +P
Sbjct: 198 HCESKGFQLNGRVIRP 213


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 59  GLIHIRWCETARGKAQRALGRV 124
           G+I+ RW E+A   A++ L R+
Sbjct: 636 GIIYCRWLESAYAAAEKELNRL 657


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1057

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 241  RGEF*SDDGAVDTALRSDSASMDAGSNPPDQL*KSA*TFGERKRREETMAW 393
            +G+   DDG  +     D   ++A +    +L ++     ER+ RE  +AW
Sbjct: 988  KGKTAVDDGKFEDLSEKDLKKIEAKATKKKKLTRNEIKAKERRARERELAW 1038


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 166 LSDKSNQLKPLL*ESVPEFLLIIKPRGEF*SDD 264
           LS+  N   P L +++ +FL I +PRG   S D
Sbjct: 67  LSENENFRNPKLLDNLQDFLDIKEPRGTMISKD 99


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 245 ENFRAMTAQWTLHCG 289
           E F ++ AQW  HCG
Sbjct: 484 EPFNSLGAQWCAHCG 498


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 42  LASTSQASSIFGGARPREERLKELS 116
           L S+    +I GG   RE+++KELS
Sbjct: 170 LQSSLNRENISGGRTAREQKVKELS 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,500
Number of Sequences: 5004
Number of extensions: 28320
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)