Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N04
         (445 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0539 + 3869156-3869908                                           28   2.9  
06_01_0529 + 3831100-3831852                                           28   2.9  
06_01_0479 + 3419657-3420337                                           28   2.9  
03_01_0030 + 290232-291020                                             28   2.9  
10_06_0148 - 11263441-11263908                                         27   9.0  
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557...    27   9.0  

>06_01_0539 + 3869156-3869908
          Length = 250

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   REPRTVKEPVNSLASTSQASSIFGGARP 89
           +EP  V++ V SL  T Q  + FGG RP
Sbjct: 102 QEPIPVEQLVQSLCDTKQGYTQFGGLRP 129


>06_01_0529 + 3831100-3831852
          Length = 250

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   REPRTVKEPVNSLASTSQASSIFGGARP 89
           +EP  V++ V SL  T Q  + FGG RP
Sbjct: 102 QEPIPVEQLVQSLCDTKQGYTQFGGLRP 129


>06_01_0479 + 3419657-3420337
          Length = 226

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   REPRTVKEPVNSLASTSQASSIFGGARP 89
           +EP  V++ V SL  T Q  + FGG RP
Sbjct: 78  QEPIPVEQLVQSLCDTKQGYTQFGGLRP 105


>03_01_0030 + 290232-291020
          Length = 262

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 93  RAVSHHRIWMRPDSSRRASLPVLSRSAAPSC 1
           R ++HHRI + P+ S     P   R  +P C
Sbjct: 111 RTIAHHRIPLPPERSHARDYPRQRRGCSPYC 141


>10_06_0148 - 11263441-11263908
          Length = 155

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 395 HHAMVSSRRFLSPKVQADF*SWSGGFEPASIDAESDRSAVSTAP 264
           +HAM++++       +    +W   ++P S+    D+ A STAP
Sbjct: 27  NHAMLANKVEAGGAYRHTPNAWRFAYQPPSLQVTGDQPATSTAP 70


>01_05_0283 -
           20354065-20354154,20354579-20354890,20355566-20355763,
           20356371-20356754,20357445-20357858,20359771-20360022
          Length = 549

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 317 QTHLTNSKNQPELSVKENVVRKPWHGGRAFSNNPRLS 427
           Q+      N P  SVKEN     WH G  +    R++
Sbjct: 510 QSSQQQQNNNPVTSVKENQCVMDWHYGCKYQRRTRMA 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,398,811
Number of Sequences: 37544
Number of extensions: 203171
Number of successful extensions: 501
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)