Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_N04
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49067-2|CAA88850.1|  283|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AB038505-1|BAB11970.1|  283|Caenorhabditis elegans galectin LEC-...    28   3.5  

>Z49067-2|CAA88850.1|  283|Caenorhabditis elegans Hypothetical
           protein C44F1.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 167 NTYKQGIWLKPLESLLARELFEPFLARSRTTEYG*GLTRRGERVYRFFHGPRLP 6
           N+Y+ G+W K     L  +  + F  R R  + G  ++   ++++ F H  RLP
Sbjct: 74  NSYENGVWGKEERESLPFQAGQEFDLRIRVLDEGLEISADNKKIHEFKH--RLP 125


>AB038505-1|BAB11970.1|  283|Caenorhabditis elegans galectin LEC-4
           protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 167 NTYKQGIWLKPLESLLARELFEPFLARSRTTEYG*GLTRRGERVYRFFHGPRLP 6
           N+Y+ G+W K     L  +  + F  R R  + G  ++   ++++ F H  RLP
Sbjct: 74  NSYENGVWGKEERESLPFQAGQEFDLRIRVLDEGLEISADNKKIHEFKH--RLP 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,183,228
Number of Sequences: 27780
Number of extensions: 159341
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)